| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1914 |
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| Symbol | |
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| ID | 7971093 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2047244 |
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| End bp | 2048794 |
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| Gene Length | 1551 bp |
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| Protein Length | 516 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644792514 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_002943828 |
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| Protein GI | 239814918 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.235771 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAGCC AACCCGCCTC CCCTGCAAGC GCAACCCTCC TGGAGGACAG CACGGCACCG
ATCGTCGAGC AGTTGCCGGT CGGCATTTTT CGCAAGGACA CCGAGGGGCG CTTCACCTTC
GTCAATGCCA GGTTCTGCGA AATCAAGGGC ATGGCTGCAG AACAGATCCT GGGCCGCACG
CCTGCGGAGA TCGACTCCGA CGAGGCGGCT TCCTGGCAGG TGATCGAGTC TGCGGTGCGG
GGGCCGGACG GCACGGTCAT CGGCAGCCAG GGAGTCTTGC TCGACGGGGC CCCGCGCAAT
CAAGAGGACG ACGCCATGCT GGCCAACGAG CGCGAGCTGC TTCGCGCGCT GCTGGACAAC
TCTCCGGACC ACATCTACTT CAAGGATGCG CAGTCCCGCT TCATCAAGAC CAGCACGGCG
CAGGCGCTGG AGTTTGGAAT GGCCACGCCC GAAGGGCTGG TGGGAAAGTC GGACTTCGAT
GTCTTTTCCG AAGAGCATGC GCGCCCGGCG TTCGAGGACG AGCAGGAGAT CATCCGCACG
GGTGTGCCGA TGATCGGCAA GATCGAAAAG GAAACCTGGA TCGACGGGCG GCCCGACACC
TGGGCCCTGA CGACGAAGAT GCCCCTGCGA AACCGTGCGG GCCGGATCGT CGGGACCTTC
GGCATCACCA AGAACATCTC CGACCTGAAG GAGGCGGAGC GCCAGGTTGC CGAGGTGAAC
AAGCAGCTGG TCGAGGCCTC GCACCTGGCC GGCATGGCCC GCATCGCCAC CAACGTGCTG
CACAACGTCG GCAACGTGCT CAACAGCGTG AACGTGTCCG CGGCGCTCAT TCTTTCGCGC
GTTCGCGCCT CCAAGGCCCC GGGGCTTGCG CGGGCCGTCC AGCTGATGGA AGAGCACGCG
GACGACCTGG GCGCGTTCCT CGCTTCGGAC CCCAAGGGCA AGGTGCTTCC CGGCTATCTG
CGCCAGCTGG CCTCGGCGCT GGTGGCGGAG CAGAACGACG CCATCAAGGA GCTGGCGGCG
CTGGGCAAGA ACGTGGAACA CATCAAGGAG ATCATTGCCG CGCAGCAGGC CTACGCCGGC
GCATCGAGGC TGCTGGAAAA GGTGCAGGTC CGCGAACTGG TGGACGATGC ATTGCGCATC
AACGCCGAGG CGCTGGCGCA GCGCCGGATG GTGGTGGAAA AAGAGATGGC GCCTCTTCCC
GAACTGCTGC TGGACCAGGG GCGGATCTTG CAGATCCTGG TGAACCTGAT CAGCAACGCC
GAGCAGGCCA TGGACGGCGT GACCGACCGC GAGCCCCGGC TCACGGTGCG CGTGGAGCTG
GTGGCGGGCC AGCGGCTGCG CATCTGCGTG GCGGACAACG GCGTAGGCAT TGCGACGCAG
GCCCTGTCCC AGGTGTTCGT GCACGGGTTC ACCACGAAAA AGACCGGCCA TGGATTCGGC
CTGCACAGCG CCGTGATCGC CGCGCATGAA ATGGGCGGAA CCCTCACGGC CCACAGCGAC
GGGCCGGGCA CCGGCGCGGC GTTCACGCTG GAGCTTCCGG TGGAAACATG A
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| Protein sequence | MQSQPASPAS ATLLEDSTAP IVEQLPVGIF RKDTEGRFTF VNARFCEIKG MAAEQILGRT
PAEIDSDEAA SWQVIESAVR GPDGTVIGSQ GVLLDGAPRN QEDDAMLANE RELLRALLDN
SPDHIYFKDA QSRFIKTSTA QALEFGMATP EGLVGKSDFD VFSEEHARPA FEDEQEIIRT
GVPMIGKIEK ETWIDGRPDT WALTTKMPLR NRAGRIVGTF GITKNISDLK EAERQVAEVN
KQLVEASHLA GMARIATNVL HNVGNVLNSV NVSAALILSR VRASKAPGLA RAVQLMEEHA
DDLGAFLASD PKGKVLPGYL RQLASALVAE QNDAIKELAA LGKNVEHIKE IIAAQQAYAG
ASRLLEKVQV RELVDDALRI NAEALAQRRM VVEKEMAPLP ELLLDQGRIL QILVNLISNA
EQAMDGVTDR EPRLTVRVEL VAGQRLRICV ADNGVGIATQ ALSQVFVHGF TTKKTGHGFG
LHSAVIAAHE MGGTLTAHSD GPGTGAAFTL ELPVET
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