| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1897 |
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| Symbol | |
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| ID | 7971076 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2028956 |
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| End bp | 2029927 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644792498 |
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| Product | aliphatic sulfonate ABC transporter periplasmic ligand-binding protein |
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| Protein accession | YP_002943812 |
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| Protein GI | 239814902 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGATC TCTCCAGCCG CCGCCGGTTG CTGCGCGGCG CCGTTGCCGC AACCGCCGCG
AGCGCATTGC CCCGTTTCTC CTTTGCGCAG GGCAGCGGCC AGGTGCTGCG TCTCGGCTAC
ATCGGCCCCG GCAAGAAGCC CGCGGCCGCC ACCGGCTGGG CGCTGCGCCA GGGCCACCTG
CTGCGCGAGC TGGCCCCGCT CGGTTTCAAG GAAGTGACGA CGCGCAATTT TCCGAACGGG
CCCGATCTCA ACGAGGCTTT TCTTTCGGGC GCGCTCGATG TCGGCATCTA CGGCGACACG
CCCGCCGTGG TGGCCCGCTC GCGCGGCCTC GAAGGCCAGC TCATCGGTTT CGACGCGGTG
GGCATGAACG TCTGGCTGCT CACGCCGCGC GACGGCGTGC GCAGCGTGAA GGCGCTCGAA
GGCCAGTCCA TCGGCGTGGC GCGCGGCTCC TACATGCACC GCTACGTGCT GGGCCTGCTC
AAGGAGAACG GGCTGCAGAA ATCCGTCAAG GTGATCCACA TGTTCCCGCG CGACGGCGAG
GCGGCGCTCG ACCAGGGCTC GATCGCGGCC TTCGCAGCGC AGGTCGACGT GGGACCGCTG
CTCGCTTCGC GCGGCTATCC GGTCATCGAC GAGGCCGAGA AGCACCCGGC GCTGCGCGGC
ACCTCGGTGA TCGTTGCGTC GAGCAAGCTG CTGGCGGCCG CGCCCGGACT GCCTGCGGCC
TGGACGCGCG CACGCCGCAC GGCGCTGCAG GAGATCCGGC GCAACAGCGT GGACTATTAC
GCCTTTCACT CGGAGGTGAG CGGCTTTCCG CTCGAGATCG TGAAGATCTC GCACCCGCTC
TCCCACTTCC CCGAGGCCGC GTATCCGCCC GAAGGCCTGG CGCTGCTGGA CGAGGTCAAG
AAGTTCCTGC TCGCCGAGAA CCTCGTGAGC CGCGACTTCG CGCTCGCGCA ATGGCGCGCC
CAGGAAGACT GA
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| Protein sequence | MSDLSSRRRL LRGAVAATAA SALPRFSFAQ GSGQVLRLGY IGPGKKPAAA TGWALRQGHL
LRELAPLGFK EVTTRNFPNG PDLNEAFLSG ALDVGIYGDT PAVVARSRGL EGQLIGFDAV
GMNVWLLTPR DGVRSVKALE GQSIGVARGS YMHRYVLGLL KENGLQKSVK VIHMFPRDGE
AALDQGSIAA FAAQVDVGPL LASRGYPVID EAEKHPALRG TSVIVASSKL LAAAPGLPAA
WTRARRTALQ EIRRNSVDYY AFHSEVSGFP LEIVKISHPL SHFPEAAYPP EGLALLDEVK
KFLLAENLVS RDFALAQWRA QED
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