Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1892 |
Symbol | |
ID | 7971071 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2023622 |
End bp | 2023891 |
Gene Length | 270 bp |
Protein Length | 89 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644792493 |
Product | transcriptional regulator, XRE family |
Protein accession | YP_002943807 |
Protein GI | 239814897 |
COG category | [K] Transcription |
COG ID | [COG1813] Predicted transcription factor, homolog of eukaryotic MBF1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.883347 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGGACT TCGTCGAAGA CTTCGGCGTG ACCATCCGCC AGCTGCGCGA AGGCAAGGGC TGGTCGCAGG AGGCGCTGGC CGAGCGTGCC GACCTGAACC GCTCCTATGT CGGCGAGGTG GAGCGCGGAC GCGTCATTCC GTCGATCGTC ACGGCGCACA AGCTGGCCGC GGCGCTGGAC ATCAACATGG TCGGCCTGCT GCTGCGTTGC GAGCAGCTGG AGCAATCGCG CCTGGTGCGC AGGATCAACT TGGCGGCTAT AGCCTGTTGA
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Protein sequence | MKDFVEDFGV TIRQLREGKG WSQEALAERA DLNRSYVGEV ERGRVIPSIV TAHKLAAALD INMVGLLLRC EQLEQSRLVR RINLAAIAC
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