| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1883 |
|---|
| Symbol | |
|---|
| ID | 7971062 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 2015736 |
|---|
| End bp | 2016683 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644792485 |
|---|
| Product | TRAP dicarboxylate transporter, DctP subunit |
|---|
| Protein accession | YP_002943799 |
|---|
| Protein GI | 239814889 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGACCATCC TCTGCTTGGG AAACCTTGCT GCCGAAGCTC AAACACCATT GCGCGCCTGG
AACACCCACC CCGACGGCTA CCCGGTCACG GAGGCCATGA AAAGCTTCAT CCAGGAAGTG
GACGCGGCAA CCAAGGGCAA ATACAAGATC GAGCTTTTCT CCAACGCCGT GCTGGGCGAC
CAGGGCAAGG CCGTCGCCAT GCTCAAGGCC GGCGAGATCG ACGTGGCCGA GTTCAATTCG
GCGCCGCTGT CCGAGGCCGC GCCGGGGCTC AAGGCATTCA ATCTCCCGTT CCTGTTCCAC
GATTCTGCGC ACATGTTCCG GTATCTGGAT GGCGAGATGG GCACGCGCCT GGCGGAGACG
CTGAAGGCTT CGGGCTACGT GGTGCTGGGC TGGTACGACG GCGGTGCGCG TTCGTTCTAC
TGCGCCAACA AGCCGGTGAC GAAGCGCGAC GATCTGGTGG GGCAAAGAAT CCGGGTGCAG
CAATCGGAGG TGTACATCGA GATGGTCAAG CTGCTGGGTG CCACCCCGGT GGTCGTGCCC
TACAAGGAAG TGCTCGACGG ATTCCAGAAG GGAACGATCG ACTGCGCCGA AGGCAACATG
GCCTCGTACG AGGCCACCGG GCACTACAAG GTGGCCAAGT ACATGCTGCT GGACAGCCAC
ATGATTTCTC CCGAGGCACT GGTTGTCTCC AGCAAGCTGT GGGATCGGCT CAGCGCCGAG
GAGCGCACCG TGTTCCAGAA GGCCGGTAAA AAATCGGCGG TCCTGATGCG CGAGCTGTGG
GAGAAACGAA GCATCGCGGC GCGTGCCGCG GTGGCCAAGG ACGGCGTCCA GTTTGCCAAC
GTGCAGGACT TTTCTCCCTA CATCCGGAAG ATGTCGCCGC TCTACACCAA GTACATGACC
GACCCGGCCA CCCGGGCCGA ATTGTTCGCC ATCGTCGGGA ACCAGTAA
|
|---|
| Protein sequence | MTILCLGNLA AEAQTPLRAW NTHPDGYPVT EAMKSFIQEV DAATKGKYKI ELFSNAVLGD
QGKAVAMLKA GEIDVAEFNS APLSEAAPGL KAFNLPFLFH DSAHMFRYLD GEMGTRLAET
LKASGYVVLG WYDGGARSFY CANKPVTKRD DLVGQRIRVQ QSEVYIEMVK LLGATPVVVP
YKEVLDGFQK GTIDCAEGNM ASYEATGHYK VAKYMLLDSH MISPEALVVS SKLWDRLSAE
ERTVFQKAGK KSAVLMRELW EKRSIAARAA VAKDGVQFAN VQDFSPYIRK MSPLYTKYMT
DPATRAELFA IVGNQ
|
|---|
| |