| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1874 |
|---|
| Symbol | |
|---|
| ID | 7971052 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2005783 |
|---|
| End bp | 2006859 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644792475 |
|---|
| Product | phenylalanyl-tRNA synthetase, alpha subunit |
|---|
| Protein accession | YP_002943790 |
|---|
| Protein GI | 239814880 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0016] Phenylalanyl-tRNA synthetase alpha subunit |
|---|
| TIGRFAM ID | [TIGR00468] phenylalanyl-tRNA synthetase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.388089 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAGT TGGACTCCCT TGTCGCCACC GCCCGCGCCG CCTTCGCCGA AGCGAAAACG
CCCGCCGAGC TCGAAAACGC CAAGGCCCAG TTCCTCGGCA AGTCGGGCCG CATCACCGAG
CTGATGAAAG GCATGGCCGC GCTCAGCGTC GACGAGAAGA AGTCGCGCGG CGCTGCCATC
AACGTGGCCA AGCAGGCGAT CGAAGCCGCG CTGACCGAAC GCCGCCAGCA GCTCGCCGAC
GAAGAGCTTT CGCTGCAGCT GCGCGCCGAG GCGCTCGACG TGAGCCTGCC CGGCCGCCGC
CGCATTCCGG GTGGCCTGCA CCCCGTGAGC CGCACGCTGG AGCGCATCGA GGAGATCTTC
TCGAGCATGG GCTTCGACGT GGCCGACGGC CCCGAGATCG AGAGCGACTG GCACAGCTTC
ACCTCGCTCA ACAACCCGCC GAACCATCCG GCGCGCTCGA TGCAGGACAC CTTCTACGTC
GACCTCAACG GCGACGACGG CATTCCGTAC AACCTGCGTC CGCACACCAG CCCGATGCAG
GTGCGCTATG CGCATCAGCA CATCAAGAAG TACGCCGCCG AATTCGCGGC GGCCGCGGCC
GACGCCACCG GCACCGTCAA GGCGCCCGAG ATCCGCGTGA TTGCGCCGGG CCGCACCTAC
CGCGTCGACA GCGACGCCAC GCACTCGCCG ATGTTCCACC AGTGCGAAGG CCTGTGGCTC
GGCGAGAACG TGAGCTTCAA GGACCTGAAG GTCGTATTCA CCGACTTCTG CCGCACCTTC
TTCGAGAGCG ACGACCTCGT GCTGCGCTTC CGCCCGAGCT TCTTCCCGTT CACCGAGCCC
AGCGCCGAGA TCGACATCCA GTTTGCGAGC GGCCCGCTGG CCGGCCGCTG GCTCGAAGTG
GCGGGTTCGG GCCAGGTGCA TCCGAACGTG GTGCGCAACA TGGGGCTCGA CCCCGAGCGC
TACATCGGCT TTGCCTTTGG CATGGGCCCC GACCGGCTCA CCATGCTGCG CTACGGCGTG
AACGACCTGC GGCTGTTCTT CGACGGCGAC TTGCGCTTTC TCTCGCAGTT CCAGTAA
|
|---|
| Protein sequence | MNELDSLVAT ARAAFAEAKT PAELENAKAQ FLGKSGRITE LMKGMAALSV DEKKSRGAAI
NVAKQAIEAA LTERRQQLAD EELSLQLRAE ALDVSLPGRR RIPGGLHPVS RTLERIEEIF
SSMGFDVADG PEIESDWHSF TSLNNPPNHP ARSMQDTFYV DLNGDDGIPY NLRPHTSPMQ
VRYAHQHIKK YAAEFAAAAA DATGTVKAPE IRVIAPGRTY RVDSDATHSP MFHQCEGLWL
GENVSFKDLK VVFTDFCRTF FESDDLVLRF RPSFFPFTEP SAEIDIQFAS GPLAGRWLEV
AGSGQVHPNV VRNMGLDPER YIGFAFGMGP DRLTMLRYGV NDLRLFFDGD LRFLSQFQ
|
|---|
| |