Gene Vapar_1870 details

Gene Information

• Locus tag: Vapar_1870
• Symbol: thrS
• ID: 7971048
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 2002279
• End bp: 2004186
• Gene Length: 1908 bp
• Protein Length: 635 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 644792471
• Product: threonyl-tRNA synthetase
• Protein accession: YP_002943786
• Protein GI: 239814876
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0441] Threonyl-tRNA synthetase
• TIGRFAM ID: [TIGR00418] threonyl-tRNA synthetase

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.47552
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCCAGA TCACGCTTCC CGACAACTCG CGCCGCGAGT TCCCCGGCCC GGTTTCAGTG 
GCCGAAGTTG CCCAGTCCAT CGGACCCGGG CTCGCCAAGA TGACGGTGGC CGGCAAGGTC 
GACGGCAAGC TCGTCGATGC CAGCGACGTC ATCGACCATG ACGCCAGGCT CCAGATCATC 
ACGCCCAGGG ACGACGAGGG CCTGGAGATC ATCCGCCACT CGACGGCCCA CCTGGTCGGC 
CACGCCGTGA AGCAGCTCTA CCCGACGGCC AAGATGGTCA TCGGCCCGGT GATCGAGGAG 
GGCTTCTACT ACGACATCTC CTACGAGCGC CCCTTCACGC CCGAGGACAT GGCCGCCATC 
GAGGCGCGCA TGCGCGAGCT CATTGCGCAG GACTACGACG TGGTCAAGAA GATGACGCCG 
CGCGCCGAGG TCATCGAGGT CTTCAAGTCG CGCGGCGAGG ACTACAAGCT GCGCCTGGTC 
GAGGACATGC CCGACGAGCA GGCCATGGGC CTGTACTACC ACCAGGAATA CGTCGACATG 
TGCCGCGGCC CGCACGTGCC GAACACGCGC TTCCTGAAGG TCTTCAAGCT CACGAAGCTC 
GCCGGCGCCT ACTGGCGCGG CGACGCCAAG AACGAGCAGC TGCAGCGCAT CTACGGCACG 
GCCTGGGCCG ACAAGAAGCA GCTCGACCAG TACATCCAGC GCATCGAGGA AGCCGAGAAG 
CGCGACCACC GCAAGCTGGG CAAGGAGCTG GACCTGTTCC ACATCGACGA AGTGGCGCCC 
GGCGTGGTGT TCTGGCACCC CAAGGGCTGG GCCCTGTGGC AGGCGGTGGA GCAGTACATG 
CGCGGCATCT ACCGCGACAC AGGCTACTGG GAAGTGAAGG GCCCGCAGAT CCTCGACAAG 
AGCCTGTGGG AGAAAACGGG CCACTGGCAG AACTACCGCG ACAACATGTT CACGACGGAG 
TCGGAAAAGC GCGAATACGC GCTCAAGCCG ATGAACTGCC CGGGCCACGT GCTCATCTTC 
AAGAGCGACC TGCGCAGCTA CCGCGACCTG CCGCTGCGCT ACGGCGAGTT CGGCCAGTGC 
CACCGCAACG AGCCCAGCGG CGCGCTGCAC GGCATCATGC GCGTGCGCGG CTTCACGCAG 
GACGACGGCC ACATCTTCTG CACGGAGGAC CAGATCCTCG AAGAATGCGT GGCCTACACG 
GCGCAGCTGC AGAAGGTCTA CGCCGACTTC GGCTTCACGG AAATCCTCTA CAAGGTGGCC 
ACGCGCCCCG ACAACCGCGT GGGCTCCGAC GAGCTCTGGG ACAAGGCCGA GCACGCGGTG 
ATGGAGGCGC TGCGCCGTTC GGGCGTCGAC TTCATCATCT CGCCCGGCGA CGGTGCCTTC 
TACGGCCCCA AGATCGAATA CACGCTGAAG GACGCGCTGG GCCGCCAGTG GCAGTGCGGC 
ACGATGCAGG TCGACTTCAA CACGGCCGAG CGCCTGGGCG GCGAGTACGT CACGGAAACG 
AGCGGCCGCG CGCACCCCGT CATGCTGCAC CGCGCCATCG TCGGCAGCCT GGAGCGCTTC 
ATCGGCATGC TGATCGAACA CCATGCCGGC GCGCTGCCCG CATGGCTCGC TCCGGTGCAG 
GTGGCGGTGC TCAACATCAG CGAAGGCCAG GCCGACTACG CCGCTTCAGT GGCGAAAACG 
CTGCAGAATC AAGGGCTTAG GGTCCAGCTG GATCTGCACA ACGAGAAGAT TACGTATAAA 
ATACGCAAGC ATTCGTTGCA AAAGCTTCCC TACATCCTTG TCGTAGGCGA CAAAGAGAGA 
GAAGCTGGTG CCGTCGCAGT GCGCGCCCGG GGCAATCAAG ACCTCGGTGC AATGTCCCTC 
GAATCGTTCG TGCAACGGCT CGTCCAGGAT GTTGCTGACA AGCGTTGA 

 

Protein sequence

MIQITLPDNS RREFPGPVSV AEVAQSIGPG LAKMTVAGKV DGKLVDASDV IDHDARLQII 
TPRDDEGLEI IRHSTAHLVG HAVKQLYPTA KMVIGPVIEE GFYYDISYER PFTPEDMAAI 
EARMRELIAQ DYDVVKKMTP RAEVIEVFKS RGEDYKLRLV EDMPDEQAMG LYYHQEYVDM 
CRGPHVPNTR FLKVFKLTKL AGAYWRGDAK NEQLQRIYGT AWADKKQLDQ YIQRIEEAEK 
RDHRKLGKEL DLFHIDEVAP GVVFWHPKGW ALWQAVEQYM RGIYRDTGYW EVKGPQILDK 
SLWEKTGHWQ NYRDNMFTTE SEKREYALKP MNCPGHVLIF KSDLRSYRDL PLRYGEFGQC 
HRNEPSGALH GIMRVRGFTQ DDGHIFCTED QILEECVAYT AQLQKVYADF GFTEILYKVA 
TRPDNRVGSD ELWDKAEHAV MEALRRSGVD FIISPGDGAF YGPKIEYTLK DALGRQWQCG 
TMQVDFNTAE RLGGEYVTET SGRAHPVMLH RAIVGSLERF IGMLIEHHAG ALPAWLAPVQ 
VAVLNISEGQ ADYAASVAKT LQNQGLRVQL DLHNEKITYK IRKHSLQKLP YILVVGDKER 
EAGAVAVRAR GNQDLGAMSL ESFVQRLVQD VADKR