| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1865 |
|---|
| Symbol | |
|---|
| ID | 7970882 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1996617 |
|---|
| End bp | 1998335 |
|---|
| Gene Length | 1719 bp |
|---|
| Protein Length | 572 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644792466 |
|---|
| Product | thiamine pyrophosphate protein domain protein TPP-binding |
|---|
| Protein accession | YP_002943781 |
|---|
| Protein GI | 239814871 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACAT CACAACCCGC CGGCCACCTG ATCGTCGAAT GCCTGGTCGA GCAGGACATG
GAGATCGCGT TCGGCGTACC CGGCGAGAGC TTCCTGGCGG TGCTGGACGG CTTTCATGCC
TACCGCGAGC GGGCCCGCTT CATCGTCAAC CGGCAGGAGG GCGGCGCGGC CTTCATGGCC
GAGGCGCACG GCAAGCTCAC GGGGCGCCCG GGCGTGTGCT TCGTGACGCG CGGGCCGGGC
GCCACCAACG CATCGATCGG CGTGCACACA GCGTTCCAGG ATTCGACGCC GATGGTGCTG
TTCGTCGGCG ACGTCGGCAG CGACTTCCGC GACCGCGAGG CTTTCCAGGA GGTCGACTAC
GGCAGCTTCT TCGGACCCTG CACCAAGGGC TTTGCCAAGC GCGTGGAGCG CATCGACGAC
GCCGACCGCA TTCCCGAATA CGTGGCGCGC GCCTTCGCCA CCGCGATGAA CGGCCGTCCG
GGGCCGGTGG TGCTGGTGCT GCCCGAGGAC ATGCTGCGCA CACAGACCAC CGCGCGGCCG
CTCAGGCGCG TGGAGGCGGT GCAGCCCTGG AGCGACCCGG GCGCGCTGCG CACGCTGCGC
GAGCTGCTGC TGAAGTCCGA GCGGCCGCTG GTGATTGCGG GCGGCGGCGG CTGGACGGCG
CAGGCCGCGC AGGCGCTGCA GCGCTTTGCC GAGAACTGGC GGCTGCCGGT GGCCAATGCC
TTCCGCTTCC AGGACACTTT CGACAACCAC CATCCGCTGT ATGCGGGCGA CGTCGGCATC
GCCATCAATC CGAAGCTCGC ACAGCGCGTG AAGGACGCGG ACCTGATCCT CGCCATCGGC
CCGCGCCTTG GCGAGATGAC CACCGGCGGC TACACGCTGC TCGAGGCGCC GAAGGCCCAA
CAAAAGCTGG TGCACATCCA CGCCAGTGCC GAGGAACTCA ACCGCGTCTA CCAGGCCGAC
CTGGCCATCA ACGCCGGCAT GAGCGCCGCC GCGCGCAGCC TCGAGGTGCT GAGCGCACCG
CCCACGCTGC CGTGGGAAGA ATGGACGTTG CAGGCCCATG CGGACTACGA GGCGAACCTC
GAGCCGCAGC CGCTCGCCGG CATGCCGGCC GAAACGCCGC GCGGCCCCAT CGACATGGCC
GCAGTGGTCG CGCTGTTGCA AAAGCACCTG CCGCCGGACG CGGCCATCAC CAACGGCGCC
GGCAACTTCG CGAGCTGGGT GCACCGCTAC TTCCGCTACC ACGGCCTCGC AAAGGGCCAC
AAGACGCAGC TGGCACCCAC CAGCGGCGCG ATGGGCTACG GCGTGCCGGC GGGCATTGCG
GCCAACCTGA CAACGGGGCG CGTGGCCTTC ACGATCGCGG GCGACGGCGA TTTCCTGATG
ACCGGGCAAG AGCTCGCGAG CGCTGCGCAG CACGGAGGCA AGAGCATCAT CGTGCTGCTG
AACAACGGCA TGTTCGGCAC CATCCGCATG CACCAGGAGC GCGAGTACCC CGAGCGCGAA
AGCGGCACCG CGCTGCGCAA CCCCGACTTC TGCGGCCTCG CGCGGGCCTA CGGCTACGCG
GCCGAGCGCG TGACCGAAAC CGCGCAGTTC GAGGCCGCGC TGCTGCGCGC GCTGGCGGCC
GATACGGGCA CGCTGATCGA GATCCCGCTG GACCCGGAGG TGATCACCAC GCGCGGCACG
CTCGCGTCGA TCACTCGGGC GGCGCAGGCG CGGGGCTGA
|
|---|
| Protein sequence | MSTSQPAGHL IVECLVEQDM EIAFGVPGES FLAVLDGFHA YRERARFIVN RQEGGAAFMA
EAHGKLTGRP GVCFVTRGPG ATNASIGVHT AFQDSTPMVL FVGDVGSDFR DREAFQEVDY
GSFFGPCTKG FAKRVERIDD ADRIPEYVAR AFATAMNGRP GPVVLVLPED MLRTQTTARP
LRRVEAVQPW SDPGALRTLR ELLLKSERPL VIAGGGGWTA QAAQALQRFA ENWRLPVANA
FRFQDTFDNH HPLYAGDVGI AINPKLAQRV KDADLILAIG PRLGEMTTGG YTLLEAPKAQ
QKLVHIHASA EELNRVYQAD LAINAGMSAA ARSLEVLSAP PTLPWEEWTL QAHADYEANL
EPQPLAGMPA ETPRGPIDMA AVVALLQKHL PPDAAITNGA GNFASWVHRY FRYHGLAKGH
KTQLAPTSGA MGYGVPAGIA ANLTTGRVAF TIAGDGDFLM TGQELASAAQ HGGKSIIVLL
NNGMFGTIRM HQEREYPERE SGTALRNPDF CGLARAYGYA AERVTETAQF EAALLRALAA
DTGTLIEIPL DPEVITTRGT LASITRAAQA RG
|
|---|
| |