Gene Vapar_1864 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1864 
Symbol 
ID7970881 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp1995867 
End bp1996523 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content66% 
IMG OID644792465 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002943780 
Protein GI239814870 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.796207 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGGCCC CCAAGGATTC CTCGCCCGAA ACGGCCGAGC CGCGTTCGCG CGATGCCGAC 
CGCTCGCAAC TCGCCATCCT TGCGTCGGCG CGCGACGAGT TTGCCCAGCG GGGACTCGCC 
GGCGCACGCA TGGACAGCAT CGCCGAGCGC GCAGGCCTGA ACAAGCGCCT CATCTACTAC 
TACTTCGGCA GCAAGGACGA CCTGTTCCTG GCGGTGCTCG AGCGCACCTA CGCCGACATC 
CGCGAGGCCG AGCAGCGGCT GCACCTGGAC GAGATCGACC CGGTCGAGGC GATCCGCCAG 
CTGGTCTCCT TCACCTGGCA CTACTACCTG GAGCACCCCG AGTTCATCAC GCTGCTGAAC 
AGCGAGAACC TGCATTGCGC GGCGCACCTC AAGCGCTCCG AACGCATCCA GGAGATGAAC 
TCGCCGCTGG TGCAGCTGCT GGACACGGTG CTCGAGCGCG GCCGGCGCGA CAAGCTGTTC 
CGCGCCGGCG TGGACCCGGT GCAGCTGTAC ATCTCGATCG CGTCGCTGTG CTACTTCTAT 
CTCTCGAACA ACCACACGCT CTCGGCGATC TTCGGCCGTG ACCTGCGCGC ACCCAAGGCC 
ATGGCCCAGC GCCTGTCGCA CATGACCGAC CTCGTGCTGG GCTACGTGCT GCACTGA
 
Protein sequence
MKAPKDSSPE TAEPRSRDAD RSQLAILASA RDEFAQRGLA GARMDSIAER AGLNKRLIYY 
YFGSKDDLFL AVLERTYADI REAEQRLHLD EIDPVEAIRQ LVSFTWHYYL EHPEFITLLN 
SENLHCAAHL KRSERIQEMN SPLVQLLDTV LERGRRDKLF RAGVDPVQLY ISIASLCYFY 
LSNNHTLSAI FGRDLRAPKA MAQRLSHMTD LVLGYVLH