| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1838 |
|---|
| Symbol | |
|---|
| ID | 7970855 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1970017 |
|---|
| End bp | 1971009 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644792439 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002943754 |
|---|
| Protein GI | 239814844 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3181] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTTTT CAATGCAGCG CGTCCAGCCG GTTCGCCGGG CGCTCGGCGC CGGTCTCTTT
CTAGCGGCCA TGGGCCTCGC CGGTCTTGCG CAGGCGCAAG GCACGCCCAT CCGCATCCTG
GTGGGCTTTC CCGCGGGCGC GGGCACCGAC GCCATCGCAC GCACGCTGGG CGAAAAACTC
AAGGACGTGC TGGGCGTGCC GGTGGTGGTC GAGAACCGCG CCGGCGCCGG CGGACAGATC
GCGGCGCAGG CGCTCAAGGC AGCGCCGGCC GATGGCCACA CGCTGTTCCT CTCGCACGAC
CATTCGATCT CCATCCTGCC GCAGGTGGTG AAGAACCCCG GCTTCAACCC TGCGACCGAC
TTCGTGCCGG TGGCCGGATT CGCCACCTTC GCCAATGTGC TGGCCGTCTC GGGCGGCACG
CCGGCCAAGA GCATCGACGA ATATGTGAAG TGGGTTCGCA CCCAGCGCGG CGGCAAGGAA
ACCATCGGCA TTCCGGCACC GGCCTCGATC CCCGAGTTCC TGGTGAAGAT GATCTCGGAA
AAATACAAGA TCGACGTGCA GCCCGCGCCC TACCGCGGCA GCGCGCCGAT GACGGCGGAC
ATGCTGGGCA ACCAGATCAC GGCCGGCATC GCCTCGGTGC CCGACTTCAT CGAGAACCAC
AAGGCCGGCA AGGTGCGCAT CGTGGCCTCC ATCGGCGCCA AGCGCCAGGC CGTGCTGCCG
AACGTGCCCA CCTTCACCGA GCTGGGCTTC TCCAACCTGG AAGACCTGCC CTACTACGGC
ATCTTCGCGC CCGTGGGCAC GCCGCAGCCG ATCATCGACA AATACGGCGA CGCGCTGCAG
AAGGTGCTGG CCATGCCCGA CGTGAAGCAG AAGCTCACGA CCATGGGGCT CACGGTCGGC
TACGAGCCGC AGGGCCAGTT CGCGGGCCGC GTGCGCAGCT ACACGCAGAC CTGGGAACGC
ATCATCCAGT CGAGCGGCTT CAAGCCTCTC TGA
|
|---|
| Protein sequence | MVFSMQRVQP VRRALGAGLF LAAMGLAGLA QAQGTPIRIL VGFPAGAGTD AIARTLGEKL
KDVLGVPVVV ENRAGAGGQI AAQALKAAPA DGHTLFLSHD HSISILPQVV KNPGFNPATD
FVPVAGFATF ANVLAVSGGT PAKSIDEYVK WVRTQRGGKE TIGIPAPASI PEFLVKMISE
KYKIDVQPAP YRGSAPMTAD MLGNQITAGI ASVPDFIENH KAGKVRIVAS IGAKRQAVLP
NVPTFTELGF SNLEDLPYYG IFAPVGTPQP IIDKYGDALQ KVLAMPDVKQ KLTTMGLTVG
YEPQGQFAGR VRSYTQTWER IIQSSGFKPL
|
|---|
| |