| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1824 |
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| Symbol | |
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| ID | 7970841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1957591 |
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| End bp | 1958058 |
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| Gene Length | 468 bp |
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| Protein Length | 155 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644792425 |
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| Product | transcription activator effector binding |
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| Protein accession | YP_002943740 |
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| Protein GI | 239814830 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3708] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.343494 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGAAGA ATCCCCCGAT GGAACCCATC CGCCGGCACC ACGGCGCCTT CCGGGTCGCA
GGCCTCACGG TCCGCACCAC CAACCGCGAA GAGAACGACC CCGCAACCGC CCGCATCGGC
GCGCTGTGGA ATCGCTTCTT CGGCGAGGAG ACTTACCGGT CGACGCCCGG CCGCACCGGC
GACGCCCGCA TCTACGGCGT CTACTCCGGC TACGAATCCG ACGCGCACGG CGCCTTCGAC
CTGACCGTGG GCGTGGCCGT CGCGGACGCA GCGGGCAGCG TGGCCATCGA CGCCGGCAAC
TATCTCGTCT TCACGGGCCA GGGCGAGATG CCGCAGATGG TGATCGCCGC CTGGCAGCGC
ATCTGGCAGT ATTTCGAAGC ACACCCGGAA ATCGTGCGCC GCTACCGCAG CGATTTCGAA
GCCTACGAGG GGCCGGACAA GGTGGCGATC CACATCGGAG TTTCATGA
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| Protein sequence | MQKNPPMEPI RRHHGAFRVA GLTVRTTNRE ENDPATARIG ALWNRFFGEE TYRSTPGRTG
DARIYGVYSG YESDAHGAFD LTVGVAVADA AGSVAIDAGN YLVFTGQGEM PQMVIAAWQR
IWQYFEAHPE IVRRYRSDFE AYEGPDKVAI HIGVS
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