Gene Vapar_1821 details

Gene Information

• Locus tag: Vapar_1821
• Symbol: rplI
• ID: 7970838
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 1954776
• End bp: 1955228
• Gene Length: 453 bp
• Protein Length: 150 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 644792422
• Product: 50S ribosomal protein L9
• Protein accession: YP_002943737
• Protein GI: 239814827
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0359] Ribosomal protein L9
• TIGRFAM ID: [TIGR00158] ribosomal protein L9

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.215704
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAAATCA TTCTTCTGGA CAAGGTTCTG AACGTCGGCG GCCTGGGCGA CATCGTCAAG 
GTCAAGGACG GCTACGCACG CAACTTCCTG ATCCCGACGG GCCGCGCCCG CCGCGCCACC 
GCTGCCAACA AGGCCGAATT CGAAGCCAAG CGCGTCGAAC TCGAAAAGGC TGCGGCCGCC 
AAGCTGGCCG AGTCGCAAGC CCAGGGCGAG AAGCTCGGCG GCACCACTGT CAAGCTGACC 
CAAAAGGCCG GCGTCGACGG CCGCCTGTTC GGCTCGGTCA CCAACGGCGA CATCGCCGAA 
GAACTGGGCA AGCAAGGCTA CAAGGTTGCC AAGTCGCAAG TGCGCCTGCC CAACGGCCCA 
ATCAAGGTCG TCGGCGACAG CACCGTGAGC GTTGCGCTGC ACACCGACGT GGTGGTCGAC 
ATCACCGTCA CGGTCTACGG CGAAACCGCC TGA 

 

Protein sequence

MQIILLDKVL NVGGLGDIVK VKDGYARNFL IPTGRARRAT AANKAEFEAK RVELEKAAAA 
KLAESQAQGE KLGGTTVKLT QKAGVDGRLF GSVTNGDIAE ELGKQGYKVA KSQVRLPNGP 
IKVVGDSTVS VALHTDVVVD ITVTVYGETA