| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1820 |
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| Symbol | rpsR |
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| ID | 7970837 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1954479 |
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| End bp | 1954760 |
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| Gene Length | 282 bp |
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| Protein Length | 93 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644792421 |
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| Product | 30S ribosomal protein S18 |
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| Protein accession | YP_002943736 |
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| Protein GI | 239814826 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0238] Ribosomal protein S18 |
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| TIGRFAM ID | [TIGR00165] ribosomal protein S18 |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.179313 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCCACGT TCAAGAAATT CAACAAAGAC AAGCGCCCGA AGCGCAACAC CCAGTCGCTG
CTGTTCAAGC GCAAGCGCTT CTGCCGCTTC ACCGTCGCTG GCGTCGAGGA AATCGACTAC
AAGGACATCG ACACGCTGCG TGACTTCATC AGCGAAAACG GCAAGATCAT CCCCGCCCGC
CTGACCGGCA CGCGCGCGAT CTACCAGCGC CAGCTGAACA CCGCCATCAA GCGCGCGCGC
TTCCTGGCCA TGGTGCCGTA CAGCGACCAG CACCGCGTCT AA
|
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| Protein sequence | MATFKKFNKD KRPKRNTQSL LFKRKRFCRF TVAGVEEIDY KDIDTLRDFI SENGKIIPAR
LTGTRAIYQR QLNTAIKRAR FLAMVPYSDQ HRV
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