Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1818 |
Symbol | rpsF |
ID | 7970835 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1953761 |
End bp | 1954135 |
Gene Length | 375 bp |
Protein Length | 124 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 644792419 |
Product | 30S ribosomal protein S6 |
Protein accession | YP_002943734 |
Protein GI | 239814824 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0360] Ribosomal protein S6 |
TIGRFAM ID | [TIGR00166] ribosomal protein S6 |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.195181 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTCACT ACGAAATCAT TTTGCTGATC CACCCGGATC AGAGCGAACA AGTTCCGGCC ATGCTGGAGC GCTACAAGGG CCTCATCACG GCCGGCGGCG GCAAGGTCCA CCGCGTTGAA GACTGGGGCC GCCGCCAGCT GGCCTACCAG ATCAACAAGC TCAGCAAGGC GCACTACCTG TGCGTCAACA TCGAAGCCGA GCAAACCGTG ATGGGCGAAC TGGAACACGC GTTCAAGTTC AACGATGCCG TGCTGCGCCA CCTCACCGTC CAGAAGAAGA AGGCCGAAAC CGGTCCTTCG TCGATGATGA AGACGGTCGA ACGCGAAGAA GCCCGCAAGG CTCAGCAGGC CGAATACGCC GCCAACAACA GCTGA
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Protein sequence | MRHYEIILLI HPDQSEQVPA MLERYKGLIT AGGGKVHRVE DWGRRQLAYQ INKLSKAHYL CVNIEAEQTV MGELEHAFKF NDAVLRHLTV QKKKAETGPS SMMKTVEREE ARKAQQAEYA ANNS
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