Gene Vapar_1818 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1818 
SymbolrpsF 
ID7970835 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1953761 
End bp1954135 
Gene Length375 bp 
Protein Length124 aa 
Translation table11 
GC content60% 
IMG OID644792419 
Product30S ribosomal protein S6 
Protein accessionYP_002943734 
Protein GI239814824 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0360] Ribosomal protein S6 
TIGRFAM ID[TIGR00166] ribosomal protein S6 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.195181 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTCACT ACGAAATCAT TTTGCTGATC CACCCGGATC AGAGCGAACA AGTTCCGGCC 
ATGCTGGAGC GCTACAAGGG CCTCATCACG GCCGGCGGCG GCAAGGTCCA CCGCGTTGAA
GACTGGGGCC GCCGCCAGCT GGCCTACCAG ATCAACAAGC TCAGCAAGGC GCACTACCTG
TGCGTCAACA TCGAAGCCGA GCAAACCGTG ATGGGCGAAC TGGAACACGC GTTCAAGTTC
AACGATGCCG TGCTGCGCCA CCTCACCGTC CAGAAGAAGA AGGCCGAAAC CGGTCCTTCG
TCGATGATGA AGACGGTCGA ACGCGAAGAA GCCCGCAAGG CTCAGCAGGC CGAATACGCC
GCCAACAACA GCTGA
 
Protein sequence
MRHYEIILLI HPDQSEQVPA MLERYKGLIT AGGGKVHRVE DWGRRQLAYQ INKLSKAHYL 
CVNIEAEQTV MGELEHAFKF NDAVLRHLTV QKKKAETGPS SMMKTVEREE ARKAQQAEYA
ANNS