Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1805 |
Symbol | |
ID | 7970822 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 1940119 |
End bp | 1940532 |
Gene Length | 414 bp |
Protein Length | 137 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644792406 |
Product | Biopolymer transport protein ExbD/TolR |
Protein accession | YP_002943721 |
Protein GI | 239814811 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0848] Biopolymer transport protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.654076 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTTTCG GAACCCAGGA CGAGCCCGAT GAGGTGATGA ACGAGATCAA CATGACGCCG CTGGTCGACG TCATGCTGGT GCTGCTGATC ATCTTCATCA TCACGGTGCC GGTGATGAAG CACGCAGTCA ACATCGACCT GCCCCGCGCC ACCAGCGAAC CCGAGCAGCC CAAGCCGCAG AACATCCTGT TCAGCATCAC GGCCGACGGC AGCTACTACT GGAACGAGCA GAAGATCGAC GACGCCGAAC TGCCCGCCCG CCTCGCCGCC GAGGCCGCCA AGGATCCGCA GCCCGAACTG CACATCCGCG GCGACAAGGA AGTGCGCTAC GAGCGCGTGG CCAAGGCGAT GTCCAAGGCG CGGGAAGCCG GCGTGCGCAA GATCGGCTTC GTTACCGAGC CCGACGCGAA ATAA
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Protein sequence | MAFGTQDEPD EVMNEINMTP LVDVMLVLLI IFIITVPVMK HAVNIDLPRA TSEPEQPKPQ NILFSITADG SYYWNEQKID DAELPARLAA EAAKDPQPEL HIRGDKEVRY ERVAKAMSKA REAGVRKIGF VTEPDAK
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