Gene Vapar_1805 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1805 
Symbol 
ID7970822 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1940119 
End bp1940532 
Gene Length414 bp 
Protein Length137 aa 
Translation table11 
GC content63% 
IMG OID644792406 
ProductBiopolymer transport protein ExbD/TolR 
Protein accessionYP_002943721 
Protein GI239814811 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0848] Biopolymer transport protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.654076 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTTTCG GAACCCAGGA CGAGCCCGAT GAGGTGATGA ACGAGATCAA CATGACGCCG 
CTGGTCGACG TCATGCTGGT GCTGCTGATC ATCTTCATCA TCACGGTGCC GGTGATGAAG
CACGCAGTCA ACATCGACCT GCCCCGCGCC ACCAGCGAAC CCGAGCAGCC CAAGCCGCAG
AACATCCTGT TCAGCATCAC GGCCGACGGC AGCTACTACT GGAACGAGCA GAAGATCGAC
GACGCCGAAC TGCCCGCCCG CCTCGCCGCC GAGGCCGCCA AGGATCCGCA GCCCGAACTG
CACATCCGCG GCGACAAGGA AGTGCGCTAC GAGCGCGTGG CCAAGGCGAT GTCCAAGGCG
CGGGAAGCCG GCGTGCGCAA GATCGGCTTC GTTACCGAGC CCGACGCGAA ATAA
 
Protein sequence
MAFGTQDEPD EVMNEINMTP LVDVMLVLLI IFIITVPVMK HAVNIDLPRA TSEPEQPKPQ 
NILFSITADG SYYWNEQKID DAELPARLAA EAAKDPQPEL HIRGDKEVRY ERVAKAMSKA
REAGVRKIGF VTEPDAK