| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1801 |
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| Symbol | rumA |
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| ID | 7970818 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1936853 |
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| End bp | 1938301 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644792402 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_002943717 |
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| Protein GI | 239814807 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.12483 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGAAT CCATCGAAGA AAAGAAAGTC CCCGCGAAAA CCCCGGCCAC CGCGGCGGGC
GAATGGCTCA AGGTCGAGTC GCTCGACCTC GACGCGCAAG GCGTGGCGCA CAACGCCGAA
GGCATGGTCG TGTTCATCGA AGGGGCCCTG CCTTTCGAGG AAGTGCAGTT CAACGTTCAT
CGCCGCAAGA ACAACTGGGA GCAGGGCACG GTCACGGCCA TCCGGCGCGA ATCGTCGCAG
CGGGTGCGGC CCGGCTGCCC GCATTTCGGC TTGCACACCG GTGCCTGCGG CGGCTGCAAG
ATGCAGCACC TGGACGAGGC GGCGCAGGTC GCGGTGAAGC AGCGCGCCCT CGAGGACAAC
CTGTGGCACC TCGGCAAGGT GCGGCCCGAC AACGTGCTGC GGCCGCTGGA AGGGCCGGCC
TGGCACTACC GCTACCGCGC CCGGCTCTCG GTGCGCCATG TGGTCAAGAA GGGCACGGTG
CTGATCGGCT TCCACGAGCG CAAGAGCCGG TACCTCGCCG ACATGCAGGT ATGCCCGGTG
CTGCCCAAGC AGGTCAGCGA CATGCTGATG CCGTTGCGCG CATTGATCGG CTCGCTGGAC
GCCCGCGAGA CCTGCCCGCA GATCGAGCTC GCCTGCGGCG ATGCGCCCGG CACCACCTCG
CTCGGCACGA TCGCCTTGGT GCTGAGGCAC CTGGAGCCGC TCTCCAATGC GGACATCGGC
CGCCTGAAGG CTTTTGCGGC GCAGAACGCC GGCGTCCAGT GGTGGCTGCA GGCCAAGGGG
CCGGACACCG TGAAGCTGCT CGAAGAAGGC GGCATGCCGC TGTCCTACGA GCTGCCCCAG
TTCGGTGTGA CGATGCCGTT CAAGCCCACC GATTTCACGC AGGTCAATCC GCACATCAAC
CGCGCCCTCG TAGGAAAGGC GCTGCGCCTG CTCGACGTGC AGGCCGACGA GCGCGTGATC
GACTGGTTCT GCGGCCTGGG CAACTTCACC CTGCCGCTGG CCAGCCGTGC GCGCGAGGTC
CTGGGCATCG AGGGCAGCGA CACCCTGGTC GCGCGCGCAA GCGACAACTT CAGCAAGAAC
CAGCCCGCCA CCTCCGCCAG GCGGGCGCTG TCGGCGACGC GGTTCGTGGC CCGCAACCTC
TTCGAAATGA CCCCCGCCAT GCTGGTGGCC GATGGCAGCG CCGACAAGTG GCTGGTCGAC
CCGCCGCGCG AAGGCGCCTT CGCGCTGGCC AAGGCCATGG CCGACCTGCA CCTGCAGCCC
GAGCTTCGAA CCGATGGCTG GACACCGCCC AAGCGCATCG TCTACGTGAG CTGCAACCCG
TCCACCCTGG CGCGGGACGC CGGCCTGCTG GTGCACCAGG CCGGCTATCG CTGCACGTTC
GCGGGGGTGA TCAACATGTT CCCGCACACG GCGCACGTCG AGTCGATTGC GGTGTTCGAC
CTGGCATGA
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| Protein sequence | MTESIEEKKV PAKTPATAAG EWLKVESLDL DAQGVAHNAE GMVVFIEGAL PFEEVQFNVH
RRKNNWEQGT VTAIRRESSQ RVRPGCPHFG LHTGACGGCK MQHLDEAAQV AVKQRALEDN
LWHLGKVRPD NVLRPLEGPA WHYRYRARLS VRHVVKKGTV LIGFHERKSR YLADMQVCPV
LPKQVSDMLM PLRALIGSLD ARETCPQIEL ACGDAPGTTS LGTIALVLRH LEPLSNADIG
RLKAFAAQNA GVQWWLQAKG PDTVKLLEEG GMPLSYELPQ FGVTMPFKPT DFTQVNPHIN
RALVGKALRL LDVQADERVI DWFCGLGNFT LPLASRAREV LGIEGSDTLV ARASDNFSKN
QPATSARRAL SATRFVARNL FEMTPAMLVA DGSADKWLVD PPREGAFALA KAMADLHLQP
ELRTDGWTPP KRIVYVSCNP STLARDAGLL VHQAGYRCTF AGVINMFPHT AHVESIAVFD
LA
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