| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1788 |
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| Symbol | |
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| ID | 7970803 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1925471 |
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| End bp | 1926556 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644792387 |
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| Product | tartrate dehydrogenase |
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| Protein accession | YP_002943704 |
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| Protein GI | 239814794 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR02089] tartrate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACCC ACAGAATCGC AGTCATCGCC GGCGACGGCA TCGGCAAGGA AACCATGCCC
GAAGGCCTGC GCGTGGTCGA TGCCGCGGCG CGCAAGTTCG GCATCGACCT GAAGTTCGAC
CACTTCGACT TCTCGAGTTG GGACTACTGC GAGAAGCACG GCAAGATGCT GCCCGACAAC
TGGAAGGACC AGATCGGCGG CCATGATGCC ATCTACTTCG GTGCGGTCGG CTGGCCCGAG
AAGATTGCCG ACCATGTCTC GCTCTGGGGC TCGCTGCTCT TGTTCCGCCG CGAGTTCGAC
CAGTACATCA ACCTGCGCCC CGCGCGCCTG ATGCCCGGCA TCACGGCCCC CGTGGTGCGG
CGCGACGGCA CGCCGCGCGA GCCCGGCGAG ATCGACATGT ACATCGTGCG CGAGAACACC
GAAGGCGAGT ACTCGAGCAT CGGCGGGCGT ATGTACGAAG GCACGCCGCG CGAGATCGTC
GTGCAGGAAA CCGTGATGTC GCGCGTGGGC GTCGACCGCG TGCTCAAGTT TGCGTTCGAG
CTTGCGCAAT CGCGCCCCAA GAAGCACCTG ACCAGCGCGA CCAAGTCGAA CGGCATTTCC
ATCACCATGC CGTACTGGGA CGAGCGCGTG GCCGAAATGG CAAAGAACTA TCCGGGCGTG
AAGCTCGACA AGTTCCACAT CGACATCCTC ACGGCCCACT TCGTGCAGCG GCCCGACTTC
TTCGACGTGG TGGTGGCCAG CAACCTGTTC GGCGACATCC TGTCCGACCT CGGCCCTGCC
TGCACCGGCA CCATCGGCAT TGCGCCCAGC GCCAACCTCA ACCCGGAGCG CACCACGCCC
TCGCTGTTCG AGCCGGTGCA CGGCTCGGCG CCCGACATCG CGGGCAAGGG CATCGCCAAC
CCCATCGGAC AGATCTGGTG CGGCGCGATG ATGCTCGAGT TCCTGGGCCA CAAGAACGCG
CACGACGCGA TCCTTTCCAC CATCGAAAAG GTGCTGGCGC CCCAAAGCGG AGCGCCGCGC
ACGCCCGACA TCGGCGGCAA GGCGAGCACC AGCGACCTTG GCAAGGCCAT TGCCGAGGCC
CTTTGA
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| Protein sequence | MTTHRIAVIA GDGIGKETMP EGLRVVDAAA RKFGIDLKFD HFDFSSWDYC EKHGKMLPDN
WKDQIGGHDA IYFGAVGWPE KIADHVSLWG SLLLFRREFD QYINLRPARL MPGITAPVVR
RDGTPREPGE IDMYIVRENT EGEYSSIGGR MYEGTPREIV VQETVMSRVG VDRVLKFAFE
LAQSRPKKHL TSATKSNGIS ITMPYWDERV AEMAKNYPGV KLDKFHIDIL TAHFVQRPDF
FDVVVASNLF GDILSDLGPA CTGTIGIAPS ANLNPERTTP SLFEPVHGSA PDIAGKGIAN
PIGQIWCGAM MLEFLGHKNA HDAILSTIEK VLAPQSGAPR TPDIGGKAST SDLGKAIAEA
L
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