| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1787 |
|---|
| Symbol | |
|---|
| ID | 7974529 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1924560 |
|---|
| End bp | 1925474 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644792386 |
|---|
| Product | alpha/beta hydrolase fold protein |
|---|
| Protein accession | YP_002943703 |
|---|
| Protein GI | 239814793 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.994871 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACTGCTT CTCTCTTCGA CTTTCCGAGA TTCGACATCG AGCGCAACGG CGTGCGCGTG
CATGGCCGCA TCGGCGGGCG CGGCGCGCCC CTGCTGCTCT TGCACGGGCA TCCGCAGACG
CACCTGATCT GGCATCGCGT GGCGCCGGCG CTCGCCGAGC GGTTCACGGT GGTGGCGGTG
GACCTGCGCG GCTATGGCGA CTCCGGCCGC CCCGCGGACG ATGCCGGCCA CGTGGCCTAC
AGCAAGCGCG AAATGGCGCT CGATGCACTC GCCGCCATGC GCCATCACGG CTTCGAGCGC
TTCGGCGTGC TGGCGCACGA CCGCGGCGCG CGCGTCGCGC ATCGGCTGGC CGCCGACCAT
GTGGCGGCCG TCGACCGCAT GCTGCTGCTG GACATCGCAC CCACGCTCTC GATGTACGAG
AACACCACCG AGGCCTTTGC GCGCGCCTAC TGGCACTGGT TCTTCCTGAT CCAGCCGCCG
CCGCTGCCCG AGGCCTTGAT CGCCTCCGAC CCGGTGCGCT ACGTGCGCAG CGTGATGGGC
GGGCGCCACG CGGGGCTCGC GCCTTTCGCG CCCGAGGTGC TGGCCGAATA CGAGCGCTGC
GCCGCCATTC CGGGCACGGC CGAATCGATC TGCGGCGACT ACCGCGCGTC CGCCACCATC
GATCTGGTGC ACGACCGCGC CGACATCGCC GCCGGCCGCA AGCTTGCGCA GCCGCTGCGC
GTGCTCTGGG GCGAGCACGG CGCGGTGGGC CGCTGCTTCG ATGTGCTCTC GCTCTGGCGC
GAATGCGCCG CCCAGGTTTC GGGCCGCGCC TTGCCGTGCG GCCACTACAT ACCGGAGGAG
GCCCCGGGCG AACTGCTCGC CGAGGCGCTC CAGTTTTTCA CTTCCCCTCT CCAGCAAGAA
GGAACCAGAC CATGA
|
|---|
| Protein sequence | MTASLFDFPR FDIERNGVRV HGRIGGRGAP LLLLHGHPQT HLIWHRVAPA LAERFTVVAV
DLRGYGDSGR PADDAGHVAY SKREMALDAL AAMRHHGFER FGVLAHDRGA RVAHRLAADH
VAAVDRMLLL DIAPTLSMYE NTTEAFARAY WHWFFLIQPP PLPEALIASD PVRYVRSVMG
GRHAGLAPFA PEVLAEYERC AAIPGTAESI CGDYRASATI DLVHDRADIA AGRKLAQPLR
VLWGEHGAVG RCFDVLSLWR ECAAQVSGRA LPCGHYIPEE APGELLAEAL QFFTSPLQQE
GTRP
|
|---|
| |