Gene Vapar_1781 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1781 
Symbol 
ID7974523 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1916355 
End bp1917812 
Gene Length1458 bp 
Protein Length485 aa 
Translation table11 
GC content68% 
IMG OID644792380 
Producthypothetical protein 
Protein accessionYP_002943697 
Protein GI239814787 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCCTGC CGACCCGCCG CCGTTCGCCA CTTTCCCTTG GTTTCTTTGC TCCCCCCGGC 
ATGGCGAGAA CCGTGCTCGC GCTTTCCCTG GCCCTGGGCG GCCTGGCCGG TGCCTCGGCG
CAAACGACGC CGTCGCTGAC ACCGCAGCAG CAGCGCTTTC ACGACATCTA CAAGGAGCTG
ATCGAGATCA ACACCAGCCA TTCGGCGGGC GACAACACGC TCGCGGCGCG CGCCATGGAA
AAGCGGCTGG TCGAAGCGGG CTTTGCGCCC GGCGACATCC AGATCTTCGA GCCCTTCCCC
AAGAAAGGCA ACCTGGTGCT GCGCTTCAAG GGCAACGGCA GCAAGAAGCC GCTGCTGCTG
CTGGCCCACA TCGACGTGGT CGAGGCCCGG CGCGAGGACT GGAAGACCGA TCCGTTCAAG
CTGCAGGAAA CCGGCGGCTA TTTCACGGCG CGCGGTTCGA TCGACGACAA GGCCATGGCC
TCGGCGCTGG TGTCGGTGCT GGGGCAGCTC AAGCAGGAAG GCTTCAAGCC CAGCCGCGAC
ATCATCCTGG CGCTGACGGC CGACGAAGAG CGCGGCGACG CGCTCAGCAA CGGCGCCTTC
TGGCTCATCA ACAACAAGCC CGAGCTGCTG CAGGCGGAGT TCGGCATCAA CGAAGGCGGC
GGCGGCGAAC TGCGCGGGGG CAAGCCCAAC CTGCACCGCA TGCAGGTGGC CGAGAAGATG
TACACCACCT ACATGCTCGA GGCGCGCGAC GTCGGCGGCC ACAGCTCGGT GCCGACCAAA
AGCAACCCGA TCTACGCACT GTCCGCGGGG CTCGAGCGCC TGGGCAGCTA CGCGTTCCCG
GTCAAGCTGG GCGAGGTCAC CAAGACCTAT TTCGCACGCA GCGCGCCGTT TGCCACCGGC
CAGCTGGCCG ACGACATGCG CGCCGTCGGC GGCGGCAACC CCGAGCCCGC GGTGATCGAG
CGGCTCTCGG CCAACCCGGC CTACAACGCG CAGCTGCGCA CCACCTGCGT GGCGACCATG
GTGCAGGCGG GCCATGCCGA GAACGCGCTG CCGCAGTCGG CCAAGGCCAC GGTCAACTGC
CGCATCCTGC CGCACGACGA CCCGGACGAA GTCGAGCGCC TGCTGACCCA GGCCGTGGGC
AACGACAAGA TCGTGGTGCG CAACCTCGGC AAGCCCTTGC GCAGCCCGGC CTCGCCGCTG
AACGGCGACC TGGTGAAGAC CGTGGAATCG GTGACGCAGG CCATGTGGCC CGGCGTGCCG
GTGGTGCCCG CGATGAGCAC CGGCGCCACC GACAGCCGCT TCATGCGCAA CGCCGGCATT
CCGATGTATG GCGTGACGGG CATGTTCCTC GATCCCGCGG ATGCGCGCGC CCACGGGCTG
GACGAGCGCA TCGAGATCCA GCGGCTCTAC GACGGCCGCG AGTTCCTGTA CCGGCTGGTG
AGCGAGCTCG CCAGATAG
 
Protein sequence
MRLPTRRRSP LSLGFFAPPG MARTVLALSL ALGGLAGASA QTTPSLTPQQ QRFHDIYKEL 
IEINTSHSAG DNTLAARAME KRLVEAGFAP GDIQIFEPFP KKGNLVLRFK GNGSKKPLLL
LAHIDVVEAR REDWKTDPFK LQETGGYFTA RGSIDDKAMA SALVSVLGQL KQEGFKPSRD
IILALTADEE RGDALSNGAF WLINNKPELL QAEFGINEGG GGELRGGKPN LHRMQVAEKM
YTTYMLEARD VGGHSSVPTK SNPIYALSAG LERLGSYAFP VKLGEVTKTY FARSAPFATG
QLADDMRAVG GGNPEPAVIE RLSANPAYNA QLRTTCVATM VQAGHAENAL PQSAKATVNC
RILPHDDPDE VERLLTQAVG NDKIVVRNLG KPLRSPASPL NGDLVKTVES VTQAMWPGVP
VVPAMSTGAT DSRFMRNAGI PMYGVTGMFL DPADARAHGL DERIEIQRLY DGREFLYRLV
SELAR