| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1773 |
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| Symbol | |
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| ID | 7974515 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1907621 |
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| End bp | 1909033 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644792372 |
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| Product | putative transmembrane protein |
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| Protein accession | YP_002943689 |
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| Protein GI | 239814779 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1055] Na+/H+ antiporter NhaD and related arsenite permeases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.21371 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAA CAATCCGCCT TGCGGCAGCC GCAGCGCTGC CGATGATGTT CCCCGCGCTG
GCCATGGCGG CCGAGCTCGA CGGCAGCAAG CTGTCGGCGC TCTGGGGTGT TCCGTTCGCG
GGCATCCTGC TGTCGATTGC GCTGATGCCG CTGCTGGCCC CGTCGGTCTG GCACCACCAC
TACGGCAAGA TCTCCGCCGC CTGGGCGCTG GCGTTCCTGC TTCCCTTTGC CGCGATCCAT
GGCGCGCCGC TGGCCGGCTC CCAGTTCGTG CACGCGCTGG TGGAGGAATA CATCCCCTTC
ATCATCCTGC TCACGGCGCT GTTCACGGTG GCGGGCGGCA TCCACATCCG CGGCAACCTG
CACGGCGCGC CCGGCCTCAA CACGGCCATC CTTGCGATTG GCGCAGTGCT CGCGAGCCTC
ATGGGAACCA CGGGCGCCTC GATGCTCTTG ATTCGCCCGC TGATCCGCGC CAACGACAAC
CGGGTGAGCA AGGCGCACGT GGTGGTGTTC TTCATCTTCA TCGTCTCGAA TGCGGGCGGC
TCGCTCACGC CGCTCGGCGA CCCGCCGCTG TTCCTCGGCT TCCTGAAAGG CGTCGATTTC
TTCTGGACGG CGCGCAACAT CCTGCCCAAC ACGCTGTTCC TCGTCGGCAT GCTGCTGGCG
CTGTTCTACG TCATCGACCG CCACCTCTAC CGCAAGGAAG GCGTGCTGCC ATTCGACCCG
ACGCCGGACA CCCGGCGCGT CGGCTTCGAC GGCGCCGCCA ACTTCTGGCT GCTGGGCGGA
ATCGTCTTCT TCGTGCTGCT TTCCGGCGTC TGGAAATCGC CCGTCGGCTT CGAGGTGTTC
GGCACGCACG TCGGGCTGCC GGGGCTGGTG CGCGACGCCG GGCTCATCGC CATCACGCTC
GTCTCGTTCA AGACCACCGC GGCCAAGGTG CATGTCGACA ACCAGTTCGA ATGGGGTCCG
ATGGCCGAGG TGGCCAAGCT GTTCGCGGGC ATCTTCCTGA CCATCATCCC GGTGATCGCG
ATGCTCAAGG CCGGCGCGCA CGGGGCGTTC GCGCCCGTGA TCGCAGCGGT GACGAGGCCC
GACGGCCAGC CCGATCCGGC CATGTATTTC TGGGCCTCCG GCATCCTGAG CTCGTTCCTG
GACAACGCGC CGACCTACCT CGTGTTCTTC AACACCGCAG GCGGCGATCC GGCCACGCTC
ATGACCACCT ACGCCACCAC GCTGGCCGCA GTTTCGGCCG GCTCCGTGTT CATGGGTGCC
AACAGCTACA TCGGCAACGC GCCCAACCTC ATGGTCAAGG CCATTGCCGA AAGCCGCGGC
GTGCGCATGC CGAGCTTCTT CGGGTACATG GGCTGGTCCG TGGTCGTGCT GATTCCGCTG
TTCGTCCTTT CCACCTTCAT CTTCTTCCGT TGA
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| Protein sequence | MKKTIRLAAA AALPMMFPAL AMAAELDGSK LSALWGVPFA GILLSIALMP LLAPSVWHHH
YGKISAAWAL AFLLPFAAIH GAPLAGSQFV HALVEEYIPF IILLTALFTV AGGIHIRGNL
HGAPGLNTAI LAIGAVLASL MGTTGASMLL IRPLIRANDN RVSKAHVVVF FIFIVSNAGG
SLTPLGDPPL FLGFLKGVDF FWTARNILPN TLFLVGMLLA LFYVIDRHLY RKEGVLPFDP
TPDTRRVGFD GAANFWLLGG IVFFVLLSGV WKSPVGFEVF GTHVGLPGLV RDAGLIAITL
VSFKTTAAKV HVDNQFEWGP MAEVAKLFAG IFLTIIPVIA MLKAGAHGAF APVIAAVTRP
DGQPDPAMYF WASGILSSFL DNAPTYLVFF NTAGGDPATL MTTYATTLAA VSAGSVFMGA
NSYIGNAPNL MVKAIAESRG VRMPSFFGYM GWSVVVLIPL FVLSTFIFFR
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