| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1768 |
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| Symbol | |
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| ID | 7974510 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1904073 |
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| End bp | 1905008 |
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| Gene Length | 936 bp |
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| Protein Length | 311 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644792367 |
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| Product | Histone deacetylase |
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| Protein accession | YP_002943684 |
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| Protein GI | 239814774 |
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| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.70732 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGGGCCA TGCGCGCGTT CTATTCCGGC CAGTTCGTCC TGCCCCTGCC TCCGGGCCAC
CGCTTCCCGA TGTCCCGCTA TGCCCTGCTG CGCGACCGCC TGCTGGAGCA CCTGCCGGCG
GTGGACATGG ACCAGGCCCC GCGTGCCACC GACGGCGAGC TGGCGCTGGC CCACACCCCG
CAGTGGATCG CCGCCATCAG CGACGGCAGC GTGAGCCCGC AGGCCATGCG CGAGATCGGC
TTTCCCTGGA GCGAGGCGAT GGTCGAGCGC TCGCGCCGGT CCACCGGGGC GACCATCGCG
GCCTGCCGCG CGGCGTTCGC CGGCGGCGTG GCGGCCAACA TGGCGGGCGG CACGCACCAC
GCCTACGCCG ACAAGGGCGG TGGATTCTGC GTCTTCAACG ACGCCGCGGT GGCCGCGCGG
CTGATGCAGG CGGAGCACGG CCGCGCTGGC CGGCAGCTCA AGGTCGCGGT GATCGACCTG
GACGTGCACC AGGGCAACGG CACGGCCAGC ATCTTCCGCA GCGACCCGAG CGTCTTCACG
CTGTCGCTGC ACGGCCAGAA GAACTTTCCG TTCCGCAAGG AGGCGAGCGA CCTGGACGTC
GAGCTGCCCG ACGGCTGCGG CGATGCCGAC TACCTCACCG CGCTCGAGCA TGCGCTCGAC
GAGCTGGAGC GGCGCTTCTC GCCGGGCCTG GTGATCTACC TGGCGGGCGC CGACCCCTTC
GAGCGCGACC GCCTCGGCCG GCTCAAGCTG ACATTCGACG GCCTGGAGGC GCGCGACCGC
CGGGTGTTCG ACTGGGCCTG GCAGCGCCGC ATTCCGCTGG CCTTCGCGAT GGCCGGAGGC
TACGCCAGCG ACATCGCCGA AACGGTGCAG GTGCAGCTGG GCACCTTCAG GGTCGCCTTC
GACTATTGGC GCCGCTGGCA AAATGCCGCG CGATGA
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| Protein sequence | MRAMRAFYSG QFVLPLPPGH RFPMSRYALL RDRLLEHLPA VDMDQAPRAT DGELALAHTP
QWIAAISDGS VSPQAMREIG FPWSEAMVER SRRSTGATIA ACRAAFAGGV AANMAGGTHH
AYADKGGGFC VFNDAAVAAR LMQAEHGRAG RQLKVAVIDL DVHQGNGTAS IFRSDPSVFT
LSLHGQKNFP FRKEASDLDV ELPDGCGDAD YLTALEHALD ELERRFSPGL VIYLAGADPF
ERDRLGRLKL TFDGLEARDR RVFDWAWQRR IPLAFAMAGG YASDIAETVQ VQLGTFRVAF
DYWRRWQNAA R
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