| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1762 |
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| Symbol | |
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| ID | 7974504 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1896855 |
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| End bp | 1899119 |
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| Gene Length | 2265 bp |
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| Protein Length | 754 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644792361 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD |
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| Protein accession | YP_002943678 |
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| Protein GI | 239814768 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.578035 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGGCAA CTAAGTCGGG TGCCGCCGCT TCCAAATCGG CAGCCGCAAC GAAAGTGAAA
ACCGTGCCCA CGAAATCGAC CTCCATCGAC GATCCGAAAA AAGCTGCCGC CAAGGCAGTT
GCCGCCCCCG CCGCCAAGAA AGTAGGCCGC CCGCCCAAGG CCGCCGGCGC TGCCGCGCCC
GCCACCGGCG CCAAGCGCGG CCGCAAGCCC AAGGCCGGCA ACGAAGCGCC CGAAAGCGAC
GTCGACCTGT CGGACATCGA GGAAGACCTG GCCGGCGACG AGCCCGCAAC CGCCACGACC
ACCGAGGAAA AGGTCAAGCC GCTGCGCATG AAGATCAGCA AGGCGAAGGA ACGCGCCTTG
ATGAAGGAGT TCGGCCTGGA CGAGACCGTG CTCTCCGAGG AAGACCTGGC CAAGCGCCGC
TCGCGCCTGA AGACGCTGAT CACGCTCGGC AAGACCCGCG GCTACCTCAC GCACGGCGAA
ATCTCCGACC ACCTGCCCGA CAAGCTGGTC GACGCCGAGA CCATGGAAGT CGTGGTCACC
ATGCTCAACG ACATGGGCGT GGCGGTGTAC GAGCAAACGC CCGACGCCGA GACCCTGCTG
CTGAACAACA CCGCGCCCAC CGCCACCACG GTGGAAGAAG CCGAGGAAGA AGCCGAAGCG
GCCCTGTCCA CGGTGGACAG CGAATTCGGC CGCACGACCG ACCCGGTGCG CATGTACATG
CGCGAAATGG GCACGGTCGA GCTGCTCACG CGCGAAGGCG AAATCGAAAT CGCCAAGCGC
ATCGAAGGCG GCCTGATGGC CATGATGGAA GCCATCTCGG CCTCCCCCGC CACCATCGCC
GAGATCCTGC GCCTGGCCGC CGACATCCGT GAAGGCAAGG TCGTCATCTC CACCGTGGTG
GACGGCTTCT CGAACCCCAA CGAAGCCGAC GACTACGTGG CCGAGGAAGA CTTCGACGAG
TTCGACGAGG AAGACGACGA CGACGGCAAG GGCGGCTCCA AGGCCCTCAC CAAGAAGCTC
GAGGAACTCA AGCGCGATGC GCTCGAGCGC TTCGACCGCA TTGCCTCGAT GTTCGAGAAG
GTCCACAAGA TCTACGACAA GGAAGGCTAC GGCACGCCCG CGTACGAGAA GGCCCAGCAG
GCCCTGTCGG ACGAGCTCAT GACCATCCGC TTCACGGCCA AGACCATCGA GAAGCTGTGC
GACCTGGTTC GCACGCAGGT GGACGACGTG CGCAAGAAGG AGCGCGAGCT GCGCCGCATC
ATCGTGGACA AGTGCGGCTT CCCGCAGGAC GAGTTCATCC GCGATTTCTC GGGCTACGAC
AAGAACGGCA ACCGCGTGCC CTCGAACCTG CTGAACCAGA AGTGGGTCGA GAAGCAGGCC
GCGGCCGGCA AGCCCTGGAG CGCCGTGCTC GCGCGCAACA TTCCGCCGGT GCAGGAACTG
CAGCAGAAGC TCGCCGACAT CCAGTCGCGC GTGGTGGTGC CGCTCACCCA GCTCAAGGAA
ATCAACAAGC GCATGAACGA GGGCGAATCG TCCTCGCGCG ATGCCAAGAA GGAAATGATC
GAGGCCAACC TGCGCCTCGT GATCTCCATC GCCAAGAAGT ACACCAACCG CGGCCTGCAG
TTCCTGGACC TGATCCAGGA AGGCAACATC GGCCTGATGA AGGCGGTCGA CAAGTTCGAA
TACCGCCGCG GCTACAAGTT CTCGACCTAC GCCACGTGGT GGATCCGCCA GGCCATCACG
CGCTCGATCG CGGACCAGGC GCGCACCATC CGCATCCCGG TGCACATGAT CGAGACGATC
AACAAGATGA ACCGCATCTC GCGCCAGCAT CTGCAGGAGT TCGGCTTCGA GCCCGACGCC
GGCATCCTGG CTGCCAAGAT GGAGATCCCG GAAGACAAGA TCCGCAAGAT CATGAAGATC
GCGAAGGAGC CGATCTCGAT GGAAACCCCC ATCGGCGACG ACGACGATTC GCACCTGGGC
GACTTCATCG AGGACAGCAG CAACACGGCC CCGATCGAGG CCGCGATGCA GGCGGGCCTG
CGCGACGTGG TCAAGGACAT CCTCGACAGC CTCACGCCGC GCGAAGCCAA GGTGCTGCGC
ATGCGCTTCG GCATCGAGAT GTCGACGGAC CACACGCTGG AAGAAGTCGG CAAGCAGTTC
GACGTGACGC GCGAGCGCAT CCGCCAGATC GAGGCGAAGG CCCTGCGCAA GCTCAAGCAT
CCCTCGCGTT CGGACAAACT GCGCAGCTTC ATCGATACTC TGTAA
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| Protein sequence | MPATKSGAAA SKSAAATKVK TVPTKSTSID DPKKAAAKAV AAPAAKKVGR PPKAAGAAAP
ATGAKRGRKP KAGNEAPESD VDLSDIEEDL AGDEPATATT TEEKVKPLRM KISKAKERAL
MKEFGLDETV LSEEDLAKRR SRLKTLITLG KTRGYLTHGE ISDHLPDKLV DAETMEVVVT
MLNDMGVAVY EQTPDAETLL LNNTAPTATT VEEAEEEAEA ALSTVDSEFG RTTDPVRMYM
REMGTVELLT REGEIEIAKR IEGGLMAMME AISASPATIA EILRLAADIR EGKVVISTVV
DGFSNPNEAD DYVAEEDFDE FDEEDDDDGK GGSKALTKKL EELKRDALER FDRIASMFEK
VHKIYDKEGY GTPAYEKAQQ ALSDELMTIR FTAKTIEKLC DLVRTQVDDV RKKERELRRI
IVDKCGFPQD EFIRDFSGYD KNGNRVPSNL LNQKWVEKQA AAGKPWSAVL ARNIPPVQEL
QQKLADIQSR VVVPLTQLKE INKRMNEGES SSRDAKKEMI EANLRLVISI AKKYTNRGLQ
FLDLIQEGNI GLMKAVDKFE YRRGYKFSTY ATWWIRQAIT RSIADQARTI RIPVHMIETI
NKMNRISRQH LQEFGFEPDA GILAAKMEIP EDKIRKIMKI AKEPISMETP IGDDDDSHLG
DFIEDSSNTA PIEAAMQAGL RDVVKDILDS LTPREAKVLR MRFGIEMSTD HTLEEVGKQF
DVTRERIRQI EAKALRKLKH PSRSDKLRSF IDTL
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