| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1761 |
|---|
| Symbol | |
|---|
| ID | 7974503 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1895519 |
|---|
| End bp | 1896754 |
|---|
| Gene Length | 1236 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644792360 |
|---|
| Product | drug resistance transporter, Bcr/CflA subfamily |
|---|
| Protein accession | YP_002943677 |
|---|
| Protein GI | 239814767 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCCG ATGCAGACAA ACTCTGGCAG GCCCCGCGCT GGGCACTGGC CGTGCTGCTC
GCGGTGCTGG GCATGCTGGG CCCCTTCTCC ATCGACACCT ACATCCCGGC CTTCTCTGGC
ATTGCGCGCT CCATCGGCGC CACGCCGGCC GAGATGCAGC AGACACTTTC GGCCTACCTG
TTCGGCTTTG CCTTCATGAA CCTGTTCCAT GGCGCGCTGT CGGACAGCTT TGGCCGGCGG
CCGGTGGTGC TGTGGGGGCT CGCGGTGTTC ACGCTCGCCT CGCTGGGCTG CGCGCTGTCG
CAGAACATCG CGCAGCTGGT GCTGTTCCGC GGGCTGCAGG GCCTGTCGAC CGGCGCGGGC
ATCGTGGTGT CGCGCGCCGT GATCCGCGAC ATGTTCCCGC CGGCCGAGGC GCAGCGCGTG
ATGAGCCAGG TGACGATCTA CTTCGGGGTG GCGCCGGCCA TTGCGCCGAT CATCGGCGGC
TTCCTGTTCG TGCATGCGGG CTGGCACGCG GTGTTCTGGT TCCTGGTGGC GGTCGGCGTG
GTTCTGTTCG CGGCCAACTA CAAGCTGCTG CCCGAGACGC TGCACCAGAG CCAGCGCCAG
TCCTTCCACG TGCGGCACCT GCTGCGCGGC TACTGGGACC TGTGTTCCGA TCCGCGCTTC
CTGCTGCTCG CGCTCGCGAG CGGCGTGCCG TTCAACGGCA TGTTCCTCTA CGTGCTGGCC
GCGCCCGCCT TCCTGGGCGA CCACCTCTCG CTGCAGCCGC AGCAGTTCTT CTGGTTCTTC
CTGCTGACCA TCGGCGGCAT CATGCTGGGC GCGCGCGCCA GCGGCCGCAT GGCGGGCAAG
GTGACGCCCA AGCGGCAGAT CCGCGACGGC TTCCTGATCA TGCTGGTCAC CTCGGTGGTC
AACGTGGCGG CCAATTTTTT CTTCGATGCG CACGTGGCAT GGGCGCTGTG GCCGCTGGCG
GTGTTCGCCT TCGGCTGGGC GCTGATGGTG CCGGTGGTCA CGCTGCTGGT GCTCGACCTG
CACCCCGAGC GCCGCGGCAT GGCCTCGTCG CTGCAGGCCG TGATCGGCTC GACCGCCAAC
GGCCTGGTGG CCGGCGCGAT CGCGCCGCTG GTGATGCATT CCACACTGGC GCTTGCCGTC
ACCTCCATGC TGATGCTGGG CATCGGCCTG GTCGCCTGGG TCTGGCTGCA CGGCCGCTGG
CCCGAGATCG GACGAAGCCT CGCCAACGAA ACCTGA
|
|---|
| Protein sequence | MNPDADKLWQ APRWALAVLL AVLGMLGPFS IDTYIPAFSG IARSIGATPA EMQQTLSAYL
FGFAFMNLFH GALSDSFGRR PVVLWGLAVF TLASLGCALS QNIAQLVLFR GLQGLSTGAG
IVVSRAVIRD MFPPAEAQRV MSQVTIYFGV APAIAPIIGG FLFVHAGWHA VFWFLVAVGV
VLFAANYKLL PETLHQSQRQ SFHVRHLLRG YWDLCSDPRF LLLALASGVP FNGMFLYVLA
APAFLGDHLS LQPQQFFWFF LLTIGGIMLG ARASGRMAGK VTPKRQIRDG FLIMLVTSVV
NVAANFFFDA HVAWALWPLA VFAFGWALMV PVVTLLVLDL HPERRGMASS LQAVIGSTAN
GLVAGAIAPL VMHSTLALAV TSMLMLGIGL VAWVWLHGRW PEIGRSLANE T
|
|---|
| |