Gene Vapar_1750 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1750 
Symbol 
ID7974492 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1884876 
End bp1885637 
Gene Length762 bp 
Protein Length253 aa 
Translation table11 
GC content67% 
IMG OID644792349 
ProductABC transporter related 
Protein accessionYP_002943666 
Protein GI239814756 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0411] ABC-type branched-chain amino acid transport systems, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.272511 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGAGA CCGTGCTTTC GACACAGGGC CTGGTGATGC GCTTCGGCGG CATCACGGCC 
ACCAACAACG TCACGATGGA GCTCAAGCGC GGCGCGCGCC ATGCGCTGAT CGGCCCCAAC
GGTGCCGGCA AGACCACGCT CATCAACCTG CTGACGGGCG TGCTCGTGCC CACCGAAGGC
CGCATCTCGC TGCTCGGCGA AGACATCACC ACGCTCGCGC CGCACAAGCG CGTGGCGCGC
GGCCTGGTGC GCACCTTCCA GATCAACCAG CTGTTCGACT CGATGACGCC GCTCGAAACA
CTGGCGCTCG TGGTCTCGCA GCACCAGGGC ATCGCCTCGC AATGGTGGCG CCCGCTGGGG
TCCAGCAAGG CCGTGACGGA GCGCGCGGCG CAGCTGCTCG AGCAGTTCCA CCTCGGCGAC
GTGGCGCAGC AGCAGACGAA GTTCATGGCC TACGGCAAGC GACGCCTGCT CGAGATTGCG
ATTGCGCTGG CCTGCGAGCC GCGCGTGCTG CTGCTCGACG AACCGGTGGC GGGCGTTCCC
GCCGGCGAGC GCGAGGAGCT GCTGCAGACG GTGGCCGCAT TGCCGGCCGA CGTGTCGGTG
CTCTTGATCG AGCACGACAT GGACCTGGTG TTCAGCTTTG CCGACCGCAT GACGGTGCTG
GTCAACGGCA CCTTGCTGAC GGAAGGCGAC CCCGAAACCA TCGCCAACGA TCCGAAGGTG
AAAGAGGTCT ACCTGGGCCA TGGAGATGCC GTTCATGTCT GA
 
Protein sequence
MTETVLSTQG LVMRFGGITA TNNVTMELKR GARHALIGPN GAGKTTLINL LTGVLVPTEG 
RISLLGEDIT TLAPHKRVAR GLVRTFQINQ LFDSMTPLET LALVVSQHQG IASQWWRPLG
SSKAVTERAA QLLEQFHLGD VAQQQTKFMA YGKRRLLEIA IALACEPRVL LLDEPVAGVP
AGEREELLQT VAALPADVSV LLIEHDMDLV FSFADRMTVL VNGTLLTEGD PETIANDPKV
KEVYLGHGDA VHV