Gene Vapar_1742 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1742 
Symbol 
ID7974484 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp1876476 
End bp1877183 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content71% 
IMG OID644792341 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002943658 
Protein GI239814748 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.666045 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGACAC GCTCTTCCAC CACCCGCTCC CCCGCCGCGC GCGAGGGCGC GTCGCGCACC 
CAGCGCACCG ACGGCAGCAC CACGCGCCTG CACATCCTCG AAACCGCGGC CCAACTGTTC 
GCCGAGCGCG GCTTCGCCGA GAGCACCAGC AAGGAAATCT GCACGCGCGC CGGCACCAAC 
ATGGCGGCGG TCAACTACCA CTTCGGCAGC CGGGACGGGC TCTACGAGGC CGTGCTGATC 
GAGGCGCACC GCCAGCTCGT GAGCATGGAC GAGCTGATCA GCCTGGCCAG CGAGGCCGGC 
GATCCGCGGC TCAAGTTGCG CGCCTTCCTC ACGCACCTGG TCGAGATGGG CAGCCAGCCC 
AAGGCACCCT GGGGCTTTCG CGTGGTGCTG CGCGAGGCGC TGTCGCCGTC TCCGGCGCTG 
CCCGCGCTGA TCCGCCAGGC GGTGCTGCCC AAGGCCCGGC TGATCCGCGG CCTGATCGGC 
GGCATCATGG GCCTGCCCGA GGACCATCCC TCGGTGCAGC GTGGCCTGCT GTTCGCGGTG 
CTGCCCTGCA TCGTGATGAC GGTGGCACCC AAGGACCTGG CGAGCAAGGT GCTGCCGGCG 
CTGAAGGATG CCGAGGGCCT CGCGGACGAC CTGATGCGCT ACGTGTTCGC GGGCCTCGAC 
GCCATCGCGA AGGAGGCGGC GCCCGTTAAA GCTGGAAGGC GACGGTGA
 
Protein sequence
MATRSSTTRS PAAREGASRT QRTDGSTTRL HILETAAQLF AERGFAESTS KEICTRAGTN 
MAAVNYHFGS RDGLYEAVLI EAHRQLVSMD ELISLASEAG DPRLKLRAFL THLVEMGSQP 
KAPWGFRVVL REALSPSPAL PALIRQAVLP KARLIRGLIG GIMGLPEDHP SVQRGLLFAV 
LPCIVMTVAP KDLASKVLPA LKDAEGLADD LMRYVFAGLD AIAKEAAPVK AGRRR