Gene Vapar_1738 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1738 
Symbol 
ID7974480 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1871190 
End bp1872308 
Gene Length1119 bp 
Protein Length372 aa 
Translation table11 
GC content66% 
IMG OID644792337 
ProductABC-2 type transporter 
Protein accessionYP_002943654 
Protein GI239814744 
COG category[V] Defense mechanisms 
COG ID[COG0842] ABC-type multidrug transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCGACT TCCTGCTGCG CATTGCCAAC CTCTGCAAGA AGGAGCTGCT CGCCATCTTC 
AAGGACCCGG CGAGCCGCGT GATCCTGTTC GTTCCCGCCA TCATGCAGAG CCTCATCTTC
GGCTACGCCG CCACCTACGA TCTCTCGAAC GTGCCCTATG CGCTGCTCGA CCAGAGCCGC
ACGGGCGCCT CGACCGAGCT CATTGCGCAC CTGGACAGCA CCGGCGTCTT CCATCGCGTG
GCCACGCTGC GCACGCAGGC CGACATCCGC GAGGTGATCG ATACCGAGAA GGCGCTGCTC
GTGATCCAGA TCGCGCCCAA CTTCGAACAG CAGCTCGGCG CGGGCCAGCC CGCGGCCATC
CAGCTGATCC TCGATGCGCG CAACTCCAAC ACCGCGGGCT CCGCGGCCGG CTACGTGGGC
GCGGTGGTCG AGCGCTACAA CGCCGAGCTG CGCACGCGCG CCGGCGCGCC GCCGGCTCCG
CTCACCATCG AATCGCGCGC CTGGTTCAAC CCGAACCTCC AAACGCGGTG GAACCTGCTG
CCCGGCCTGA TTGCCGCGCT CAGCATGCTG CAGACGCTGC TGCTCACCGC GCTCTCGGTG
GCGCGGGAGC GCGAGCAAGG CACCTTCGAC CAATTGCTGG TCACGCCGAT GTCGCCGCTC
GAGATCATGA TCGGCAAGGC GCTGCCGCCG GTGCTGGTGG GCCTTGCGCA GTCGACGTTG
ATCCTGCTGG TCGCGCTGTT CTGGTTCGGC ATTCCGATGG CGGGCTCGCT CATCACGCTC
TACACCGGGC TGGTCTTCTT CACGGTGGCC AGCGTGGGCA TCGGCCTGTC GATCTCGGCG
GTGTCGGCCA ACATGCAGCA GGCCATGCTC TACACCTTCG TCCTGCTGAT GCCGATGATG
CTGCTCTCCG GGCTGACCAC ACCCGTGCGC AACATGCCGC ACGTGCTGCA GCTGATCACC
ATGGCCAACC CGCTGCGCTT CGCGATCGAC CTGGTGCAGC GCGTCTACCT GGAAGGCGTG
GGCCTGGCCA CGGTGTGGCA CAACCTGATT CCGCTGTCGA TCATCGCCAT CGTCACACTG
CCGCTGGCGG CCTGGCTGTT TCGCCATCGT CTGGTCTAG
 
Protein sequence
MIDFLLRIAN LCKKELLAIF KDPASRVILF VPAIMQSLIF GYAATYDLSN VPYALLDQSR 
TGASTELIAH LDSTGVFHRV ATLRTQADIR EVIDTEKALL VIQIAPNFEQ QLGAGQPAAI
QLILDARNSN TAGSAAGYVG AVVERYNAEL RTRAGAPPAP LTIESRAWFN PNLQTRWNLL
PGLIAALSML QTLLLTALSV AREREQGTFD QLLVTPMSPL EIMIGKALPP VLVGLAQSTL
ILLVALFWFG IPMAGSLITL YTGLVFFTVA SVGIGLSISA VSANMQQAML YTFVLLMPMM
LLSGLTTPVR NMPHVLQLIT MANPLRFAID LVQRVYLEGV GLATVWHNLI PLSIIAIVTL
PLAAWLFRHR LV