Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1738 |
Symbol | |
ID | 7974480 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 1871190 |
End bp | 1872308 |
Gene Length | 1119 bp |
Protein Length | 372 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644792337 |
Product | ABC-2 type transporter |
Protein accession | YP_002943654 |
Protein GI | 239814744 |
COG category | [V] Defense mechanisms |
COG ID | [COG0842] ABC-type multidrug transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCGACT TCCTGCTGCG CATTGCCAAC CTCTGCAAGA AGGAGCTGCT CGCCATCTTC AAGGACCCGG CGAGCCGCGT GATCCTGTTC GTTCCCGCCA TCATGCAGAG CCTCATCTTC GGCTACGCCG CCACCTACGA TCTCTCGAAC GTGCCCTATG CGCTGCTCGA CCAGAGCCGC ACGGGCGCCT CGACCGAGCT CATTGCGCAC CTGGACAGCA CCGGCGTCTT CCATCGCGTG GCCACGCTGC GCACGCAGGC CGACATCCGC GAGGTGATCG ATACCGAGAA GGCGCTGCTC GTGATCCAGA TCGCGCCCAA CTTCGAACAG CAGCTCGGCG CGGGCCAGCC CGCGGCCATC CAGCTGATCC TCGATGCGCG CAACTCCAAC ACCGCGGGCT CCGCGGCCGG CTACGTGGGC GCGGTGGTCG AGCGCTACAA CGCCGAGCTG CGCACGCGCG CCGGCGCGCC GCCGGCTCCG CTCACCATCG AATCGCGCGC CTGGTTCAAC CCGAACCTCC AAACGCGGTG GAACCTGCTG CCCGGCCTGA TTGCCGCGCT CAGCATGCTG CAGACGCTGC TGCTCACCGC GCTCTCGGTG GCGCGGGAGC GCGAGCAAGG CACCTTCGAC CAATTGCTGG TCACGCCGAT GTCGCCGCTC GAGATCATGA TCGGCAAGGC GCTGCCGCCG GTGCTGGTGG GCCTTGCGCA GTCGACGTTG ATCCTGCTGG TCGCGCTGTT CTGGTTCGGC ATTCCGATGG CGGGCTCGCT CATCACGCTC TACACCGGGC TGGTCTTCTT CACGGTGGCC AGCGTGGGCA TCGGCCTGTC GATCTCGGCG GTGTCGGCCA ACATGCAGCA GGCCATGCTC TACACCTTCG TCCTGCTGAT GCCGATGATG CTGCTCTCCG GGCTGACCAC ACCCGTGCGC AACATGCCGC ACGTGCTGCA GCTGATCACC ATGGCCAACC CGCTGCGCTT CGCGATCGAC CTGGTGCAGC GCGTCTACCT GGAAGGCGTG GGCCTGGCCA CGGTGTGGCA CAACCTGATT CCGCTGTCGA TCATCGCCAT CGTCACACTG CCGCTGGCGG CCTGGCTGTT TCGCCATCGT CTGGTCTAG
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Protein sequence | MIDFLLRIAN LCKKELLAIF KDPASRVILF VPAIMQSLIF GYAATYDLSN VPYALLDQSR TGASTELIAH LDSTGVFHRV ATLRTQADIR EVIDTEKALL VIQIAPNFEQ QLGAGQPAAI QLILDARNSN TAGSAAGYVG AVVERYNAEL RTRAGAPPAP LTIESRAWFN PNLQTRWNLL PGLIAALSML QTLLLTALSV AREREQGTFD QLLVTPMSPL EIMIGKALPP VLVGLAQSTL ILLVALFWFG IPMAGSLITL YTGLVFFTVA SVGIGLSISA VSANMQQAML YTFVLLMPMM LLSGLTTPVR NMPHVLQLIT MANPLRFAID LVQRVYLEGV GLATVWHNLI PLSIIAIVTL PLAAWLFRHR LV
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