Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1737 |
Symbol | |
ID | 7974479 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 1869650 |
End bp | 1871179 |
Gene Length | 1530 bp |
Protein Length | 509 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 644792336 |
Product | RND efflux system, outer membrane lipoprotein, NodT family |
Protein accession | YP_002943653 |
Protein GI | 239814743 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCGCAT CGCGCACCCT CTTCTCCTGT TCCGCGCTCG CGCTCCTTCT TGCAGGCTGC GCCGTGGGGC CCGACCACCG GCCCGCGCAG CCGCAGGCGC CGGCCGACTG GTCCGCATGG CACGGCGGCT CGGCGGCGCT GCTCGGCGCC GAGCGCAAGG CCGCGCCCAC AGCCGCCGCA TCCGGCGACT GGAAGGCCTT CGGCGATCCG CTGCTCGACC AGTTGCAAGC CCGCGCCCTG GCCGCCAACC ACGACCTGCA GACCGCGGCC CTGCACTTCG CGCAAAGCCG CGTCCAGCGC ACCGCGGCCG CGGCGCAGCA GGCGCCACAG CTCAATGCCA GCGCCAGCGT GAACCGGCAG CGCCAGAGCG AGAGCGGCGC CGCCACGCGG ATGATCGATG CGCTGGGCTC GTCGGTCGCC AACCGCGACC AGCTGATCCG CACGCTCAGC GAGCCCTACA ACCTTTACCA GGCCGGCTTC GACGCCTCCT GGGAAATCGA CCTCTGGGGC CGCGTGCGGC GCAGCATCGA GGCCGCCGAT GCGGATGCCG GCGCATCGGC CGCGCTGCTG CAGCAGGCGC AGCTCAGCGT GCAGGCCGAG GTGGCGCGCA GCTACTTCGA ACTGCGCGGC GCGCAGCGCG AACTGCGCGT GGCGAACGCC GACATCGCGG CCGCAGCCGA ATCGCTCGAG CTGGTGCAGG CGCGTGCCGA TGGCGGCCTG GTCACCGACC TGGACCCGAC GCGCCAGCGC ACGCAGCTGG CCGAACTCAA GGCGCGCATC CCCATGCTGC TGCAGCAGGA GGCGCAGGCC ATGAACCAGA TCACGCTGCT GACCGGCGCA GCGCCGGGCG CGCTGAACGC CGAACTCGCG CCAGCTTCCG ATGGCGCGGG CAACCCGCTC GAAGCGCTGC AGGCACCGCC GCTGCCCGAG CTTGCGCTGG GCCTGCCCGG CGACGTGGTG CGCCGGCGCC CCGACATCGC CGCCGCCGAA GCCCAGCTGC ATGCCGCCAC CGCGCGCATC GGCGTGGCGG TGGCCGACCT CTATCCGCGC GTCACGCTCG GTGCGGGCTT CGGCTACGAA TCGGCCGGCA GCGAGCGTTT TGGCGAATGG GGCAGCCGCC AATGGCACGT CGGTCCTTCC ATCAGCCTGC CGATCTTCGA CAACGACCGG CGCCGCAGCA CGGTGAACCT GCGCGAGCTG CAGCAGCAGG AAGCCGCGGT GGCCTTCCAG CAGGCCGTGC TCAAGGCATG GCACGAGATC GATTCGGCGC TCAGCGCCTA CGCCGCCGAG CGCCAGCGCC ATGCCGAGCT GGCCGAGCGC GAGCGCAGCA GCCGCGATGC ACTCACGCTC GCACACGCGC GCTATGCGAA CGGACTCACG GATTTCGGCG TCGAACTCGA CGCGCGCCGC GCACTGCTGC AGGCGCGGCG CGACCAGGTG CAGAGCACGA GCCGCATGGC GGTGGGCATG GTGGCGGTCT ACAAGGCGCT GGGCGGCGGC ATTCCCGCGG CGCCCGGCAC TCCAGGCTAG
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Protein sequence | MSASRTLFSC SALALLLAGC AVGPDHRPAQ PQAPADWSAW HGGSAALLGA ERKAAPTAAA SGDWKAFGDP LLDQLQARAL AANHDLQTAA LHFAQSRVQR TAAAAQQAPQ LNASASVNRQ RQSESGAATR MIDALGSSVA NRDQLIRTLS EPYNLYQAGF DASWEIDLWG RVRRSIEAAD ADAGASAALL QQAQLSVQAE VARSYFELRG AQRELRVANA DIAAAAESLE LVQARADGGL VTDLDPTRQR TQLAELKARI PMLLQQEAQA MNQITLLTGA APGALNAELA PASDGAGNPL EALQAPPLPE LALGLPGDVV RRRPDIAAAE AQLHAATARI GVAVADLYPR VTLGAGFGYE SAGSERFGEW GSRQWHVGPS ISLPIFDNDR RRSTVNLREL QQQEAAVAFQ QAVLKAWHEI DSALSAYAAE RQRHAELAER ERSSRDALTL AHARYANGLT DFGVELDARR ALLQARRDQV QSTSRMAVGM VAVYKALGGG IPAAPGTPG
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