| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1722 |
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| Symbol | |
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| ID | 7974464 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1853679 |
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| End bp | 1854974 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644792321 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_002943638 |
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| Protein GI | 239814728 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0105525 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGATTC CTCTGCTCAT TCTTTGCCTC TCGTTCACGC TCTTCCTGCT GCTGGGCGTG
CCGGTCGCTT TCTCGATCGG CCTCTCGGCC CTGTCCACGC TGCTGTATGA AGGCCTTCCG
CTGGAAGTCG GCTTCCAGCA GATGACCTCC GGCATGGGCA TCTTCTCGTT CCTTGCGATT
CCGTTCTTCA TCTTTGCCGG CGAACTGATG CTCTACGGCG GCATTGCGGA CCGCATCGTC
AACTTCGCAC GCAACGTCGT GGGCCACGTG CGCGGCGGCC TCGGCATGTC GAACGTGGTG
GCCTGCACGC TGTTCGGCGG CGTCTCGGGC TCGCCCGTGG CGGACGTCTC GGCCATGGGC
GCCGTGATGA TCCCGATGAT GAAGAAGGAG GGCTACCACG CCGACTACGC GGTCAACGTG
ACGACCCACG CGGCCCTGGT CGGCGCGCTG ATGCCGACCA GCCACAACCT GATCATCTAT
TCGCTCGCGG CGGGCGGCAA GGTGTCGATC GCGGCGCTGA TCCTGGCGGC GCTGCTGCCG
GCGGCGGTGC TCACGCTCAG CAACCTCGCG GCCGCCTACC TGGTGGCGGT GAAGCGCGGC
TACCCGGCCG GCAGCTTTCC GGGCTGGGCC ATCGTGGCGC GCTCGTTTGC GGCGGCGCTG
CCGGGCCTGT TCATCGTGGT GCTGATCCTC GGGGGCATCC TGTCGGGCGT CTTCACGGCG
ACCGAGTCGG CGGCCGTGGC GGTGCTCTAT GCGCTGGCGC TCACCATCTT CGTCTACCGC
ACGCTGAAGT GGGAGCACTT CGTCAAGGCA GCCTCGAAGG CGGTGCGCAC CACCGGCGTG
ATCCTGCTGC TGATCGGCAT CTCCAGCACC TTCGGCTACC TGATCAGCCT GTACGGCGTG
GCCGAACTCA CGGGCCAGAT GCTGTCGCAG ATCACGAGCA CGCCGTGGGT GATCTTCCTG
CTCATCAACA TCATCCTGTT CGTGCTGGGC ACCTTCCTCG ACATGGCGGC AACGATCCTG
CTGTGCACGC CGATCTTCCT GCCCATTGCA CAGCACTACG GCATGAGCTC GGTGCAGTTC
GGCATCGTGA TGCTGATCAA CTGCGCGCTC GGCCTGAACA CGCCGCCGGT GGGCACCACG
CAGTTCGTGG GCTGTGCGAT TGGCGGCGTA TCGGTGGGCA CGGTGATGAA GACCATCTGG
CCGTTCTACG GTGCGCTGAT CTTCGCGCTC GCGGTGGTCA CCTTCGTGCC GGCCTTCTCG
ACCTGGCTGC CGAGCATGTT CATGGTCGTG AAGTAA
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| Protein sequence | MTIPLLILCL SFTLFLLLGV PVAFSIGLSA LSTLLYEGLP LEVGFQQMTS GMGIFSFLAI
PFFIFAGELM LYGGIADRIV NFARNVVGHV RGGLGMSNVV ACTLFGGVSG SPVADVSAMG
AVMIPMMKKE GYHADYAVNV TTHAALVGAL MPTSHNLIIY SLAAGGKVSI AALILAALLP
AAVLTLSNLA AAYLVAVKRG YPAGSFPGWA IVARSFAAAL PGLFIVVLIL GGILSGVFTA
TESAAVAVLY ALALTIFVYR TLKWEHFVKA ASKAVRTTGV ILLLIGISST FGYLISLYGV
AELTGQMLSQ ITSTPWVIFL LINIILFVLG TFLDMAATIL LCTPIFLPIA QHYGMSSVQF
GIVMLINCAL GLNTPPVGTT QFVGCAIGGV SVGTVMKTIW PFYGALIFAL AVVTFVPAFS
TWLPSMFMVV K
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