Gene Vapar_1712 details

Gene Information

• Locus tag: Vapar_1712
• Symbol: dnaK
• ID: 7974454
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 1843258
• End bp: 1845195
• Gene Length: 1938 bp
• Protein Length: 645 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 644792311
• Product: molecular chaperone DnaK
• Protein accession: YP_002943628
• Protein GI: 239814718
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0443] Molecular chaperone
• TIGRFAM ID: [TIGR02350] chaperone protein DnaK

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.688878
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAAGA TCATCGGCAT CGACCTCGGC ACCACCAACT CGTGCGTGTC GATCATGGAA 
GGCAACACCA CGCGTGTGAT CGAGAACTCG GAAGGTGCGC GCACCACGCC GTCGATCGTG 
GCCTACCAGG AAGACGGCGA AGTGCTGGTC GGTGCCTCGG CCAAGCGCCA GGCCGTGACC 
AATCCCAAGA ACACGCTGTA CGCGATCAAG CGCCTGATCG GCCGCAAGTT CGAGGAGAAG 
GAAGTCCAGA AGGACATCGA CCTGATGCCC TACACGATCG CGAAGGCCGA CAACGGCGAC 
GCGTGGGTGG AAGTGCGCGG CAAGAAGATC GCGCCCCAGC AGGTCAGCGC CGACATCCTG 
CGCAAGATGA AGAAGACCGC CGAAGACTAT CTCGGCGAGC CCGTGACCGA AGCCGTGATC 
ACGGTGCCGG CCTACTTCAA CGACGCGCAG CGCCAGGCCA CCAAGGACGC CGGCCGCATC 
GCAGGCCTGG ACGTCAAGCG CATCATCAAC GAACCGACCG CCGCGGCGCT GGCCTTCGGC 
CTGGACAAGC AGGACAAGGC CGACCGCAAG ATCGCCGTGT ATGACCTGGG CGGCGGCACC 
TTCGACATCT CGATCATCGA AATCGCGGAT GTCGACGGCG AGAAGCAGTT CGAAGTGCTG 
TCGACCAACG GCGACACCTT CCTGGGCGGC GAAGACTTCG ACCAGCGCAT CATCGACTAC 
ATCATTGCCG AGTTCAAGAA AGAGCAAGGC GTGGACCTGG GCAAGGACGT GCTCGCGCTG 
CAGCGCCTGA AGGAAGCCGC CGAAAAGGCC AAGATCGAGC TGTCGAACAG CGCGCAGACC 
GACATCAACC TGCCCTACAT CACGGCCGAC GCCTCGGGTC CGAAGCACCT GAACATCAAG 
CTCACGCGCG CCAAGCTCGA AAGCCTGGTC GACGAGCTGG TCGAGCGCAC CATCGCGCCC 
TGCCGCCTGG CCATCAAGGA CGCCGGCATC AGCGTGTCGG ACATCAACGA CGTGATCCTG 
GTCGGCGGCA TGACCCGCAT GCCCAAGGTG CAGGAAAAGG TCAAGGCCTT CTTCGGCAAG 
GAGCCGCGCA AGGACGTGAA CCCCGATGAA GCCGTGGCCG TCGGCGCCGC CATCCAGGGC 
CAGGTGCTCT CGGGCGACCG CAAGGACGTG CTGCTGCTGG ACGTGACCCC GCTGTCGCTC 
GGCATCGAGA CCATGGGCGG CGTGATGACC AAGATGATCA CGAAGAACAC CACGATCCCG 
ACGAAGTTCG CGCAGACCTT CTCCACCGCC GAGGACAACC AGCCGGCCGT GACCATCAAG 
GTGTTCCAGG GCGAGCGCGA GATCGCCTCG GGCAACAAGC TGCTGGGCGA ATTCAACCTC 
GAGGGCATCC CGCCGGCAGC GCGCGGCACG CCGCAGATCG AGGTGAGCTT CGACATCGAC 
GCCAACGGCA TCCTGCACGT GGGCGCCAAG GACAAGGGCA CCGGCAAGGA AAACAAGATC 
ACCATCAAGG CGAACTCGGG CCTGTCGGAA GACGAGATCC AGAAGATGGT GAAGGACGCC 
GAGCTCAACG CGGCCGAGGA CAAGAAGAAG GTCGAGCTCG CGCAGGCCCG CAACCAGGGC 
GAAGCCATGG TGCACAGCGT GAAGAAGTCG CTCGGCGAGC ACGGCGCGAG CCTGGACGCC 
GGCGAGAAGG AAAAGATCGA AGCCGCGATC AAGGATCTGG AAGAAGCCCT CAAGGGCGAG 
GACAAGGCCT CGATCGAGGA AAAGACCAAC ACGCTGATGA CCGCAAGCCA GAAGCTCGGC 
GAAAAGATGT ATGCCGATGC GCAGGCCGCG GCAGGCGCCG CCGGCGGCCC GGGTGCCGCT 
GCTGGCCCGG AAGCTGCAAG CGCACCGGCC GACGACAACG TGGTCGACGC CGAGGTCAAG 
GAAGTCAAGA AGGGCTGA 

 

Protein sequence

MAKIIGIDLG TTNSCVSIME GNTTRVIENS EGARTTPSIV AYQEDGEVLV GASAKRQAVT 
NPKNTLYAIK RLIGRKFEEK EVQKDIDLMP YTIAKADNGD AWVEVRGKKI APQQVSADIL 
RKMKKTAEDY LGEPVTEAVI TVPAYFNDAQ RQATKDAGRI AGLDVKRIIN EPTAAALAFG 
LDKQDKADRK IAVYDLGGGT FDISIIEIAD VDGEKQFEVL STNGDTFLGG EDFDQRIIDY 
IIAEFKKEQG VDLGKDVLAL QRLKEAAEKA KIELSNSAQT DINLPYITAD ASGPKHLNIK 
LTRAKLESLV DELVERTIAP CRLAIKDAGI SVSDINDVIL VGGMTRMPKV QEKVKAFFGK 
EPRKDVNPDE AVAVGAAIQG QVLSGDRKDV LLLDVTPLSL GIETMGGVMT KMITKNTTIP 
TKFAQTFSTA EDNQPAVTIK VFQGEREIAS GNKLLGEFNL EGIPPAARGT PQIEVSFDID 
ANGILHVGAK DKGTGKENKI TIKANSGLSE DEIQKMVKDA ELNAAEDKKK VELAQARNQG 
EAMVHSVKKS LGEHGASLDA GEKEKIEAAI KDLEEALKGE DKASIEEKTN TLMTASQKLG 
EKMYADAQAA AGAAGGPGAA AGPEAASAPA DDNVVDAEVK EVKKG