| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1706 |
|---|
| Symbol | |
|---|
| ID | 7973634 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1835337 |
|---|
| End bp | 1836014 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644792305 |
|---|
| Product | Rieske (2Fe-2S) domain protein |
|---|
| Protein accession | YP_002943622 |
|---|
| Protein GI | 239814712 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0736967 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACAG ACAGCATTCC AACCTGGCAT CCCGTGGCCC GCTCGGCCGA ACTGCGCCCC
GGCGCCAACA TCGTCGCGGG CTTTGCCGAA GGCCAGGAGC TGGCCCTCTG GCGTGCGGCC
AGCGGCGCCG CGCAGGCCTG GGAAAACCGC TGCCCGCACC GCAGCGTGCG CTTCACGCTG
GGGCAGGTGC TGCAGGACCG CCTCGCCTGC GCGTACCACG GCTGGCAATA CGACGCCGGA
AACGGCCAGT GCGCGAGCAT TCCCGCCCAT CCCGGCATGC CAGCGCCGCG CAATGTGTGC
GCGAAGGTGT TCCATGCGGC CGAGGCGGCC GGCATGCTGT GGGTGAGCCT CGCGGCCGAG
ACGCCGCCTT CTCCGCCGCC GGGCGATGCC GTGCCAGCCG GGTGGTCGTT CTGCCGCACG
CTCAGCGTGC GCGCCGGCGT GGCCCGCGTG CGCGATGCGC TCGCGGCGCG CGGATTCGGG
TCGGAGGCGC CGCCTGCTTT GCGCGGCGCG CTCGGCAAGG TCGATGCCGC CGCGCTGATG
CTCGATGCAC AGCCGCAGCT CGCCTTCATT CACCTCTGGA CGCCCGCCGC GCCCGGCAGC
GGCGCCATGA AGAAGCTGCA CGCCGCCGCG CGCGCCCTGC GCGGCGAAAT CGAAGAACAA
CAGCAGCCGC AAGCCTGA
|
|---|
| Protein sequence | MSTDSIPTWH PVARSAELRP GANIVAGFAE GQELALWRAA SGAAQAWENR CPHRSVRFTL
GQVLQDRLAC AYHGWQYDAG NGQCASIPAH PGMPAPRNVC AKVFHAAEAA GMLWVSLAAE
TPPSPPPGDA VPAGWSFCRT LSVRAGVARV RDALAARGFG SEAPPALRGA LGKVDAAALM
LDAQPQLAFI HLWTPAAPGS GAMKKLHAAA RALRGEIEEQ QQPQA
|
|---|
| |