Gene Vapar_1697 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1697 
Symbol 
ID7974765 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp1828887 
End bp1829498 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content65% 
IMG OID644792296 
Product3'-5' exonuclease 
Protein accessionYP_002943613 
Protein GI239814703 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0349] Ribonuclease D 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.347525 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGCGACA ACCCTCCCGC ATTGCCGCCC CTCCCCGAAC GCGAGCAGAT CGCGCTGCTC 
GAACCCTTCG AGGGCCTGGG CCTGAAAGAC ATCGTGGTCG TCTCCACGCT GCAGGACGCC 
GAACATGCCG CCGCCGAATT GCTGGCCGCC GGCGTGGCCG GCTTCGACAC CGAATCCAAG 
CCCACCTTCG CGAAGAACGA GGTCTCGGGC GGCCCGCACG TGGTGCAGTT CGCCACGCGC 
GAAATGGCCT GGCTGTTCCA GCTGCACCGC ACCGAATGCA ATCCGGTGGT CGCAACGCTG 
ATTGCTTCCA CCGAACTGCG CAAGGTCGGC TTCGGCCTTT CGACCGATCT CACGCTGATA 
CGCAACCGCC TCAACATCGA GCCGAAGGCG GTGTTCGACA TCGACAGCGA GTTCCGCCAC 
CGCGGCTACC GCAAGTCGGT CGGCGTGAAG GCGGCCGTGG CGCTGGTCTT CAACCAGCGC 
TTCGTCAAGT CGCGCAAGGC GACCACCTCG AACTGGGCCA ACAGGCAGCT GACCGAAGCG 
CAGATGCGCT ACGCGGCCAA CGACGCCTAT GCATCGATCC GCGTGTTCGA TGCGCTGTTC 
GGCAAGCCCT AG
 
Protein sequence
MSDNPPALPP LPEREQIALL EPFEGLGLKD IVVVSTLQDA EHAAAELLAA GVAGFDTESK 
PTFAKNEVSG GPHVVQFATR EMAWLFQLHR TECNPVVATL IASTELRKVG FGLSTDLTLI 
RNRLNIEPKA VFDIDSEFRH RGYRKSVGVK AAVALVFNQR FVKSRKATTS NWANRQLTEA 
QMRYAANDAY ASIRVFDALF GKP