| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1690 |
|---|
| Symbol | |
|---|
| ID | 7974758 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1822004 |
|---|
| End bp | 1822963 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644792289 |
|---|
| Product | Methyltransferase type 11 |
|---|
| Protein accession | YP_002943606 |
|---|
| Protein GI | 239814696 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2230] Cyclopropane fatty acid synthase and related methyltransferases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.930143 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCAAGG TCTTCCAGCC CGATTTCCGT CCTGCGGCCA CCCGCACTGC GCCTCCGGCA
TCCGCGGCAC CCGAAGCCTC CATCACCAAG GCCGACACGC AGGACTATTT CACCGAGGTG
GCCGACGACT ACCGCGCATG GAGTCCCAGC TACAACATGC ACTTCGGCTT CTGGCGGCTC
GGGCTGAATC CGCTGCGACG CGAAGGCATG CTGGTGGAAA TGAACCGCGC CGTCGGCCGC
GCGCTCAAGC TCGACCAGCC CCGGCCAGCG CACCAAAGCG CAGAGCGCCG CTGCGTGGTC
GACCTTGGCT GCGGCGCCGG GGCCACCGCG CGCACGCTGG TGGGCGACGA CCCGTCGCTC
TTTGCCGTCA CGGTCACCAA CGTGGCGGTG CAGAACCGCA TCGCGCTGCG GCTCGATGCC
GGCGCCGGCG TGGCCGACCG CGTGGCGCAC ATCGAGGCCG ACTACACGCG CACTGGCCTG
CCCACCGCAC AGGCCGACGG CGCCTGGGCC GTGGAAAGCG CCTGCTACGC GAGCGGCACG
GCCAAGGCCG ATTTCGTGCG CGAGGCGGCC CGCCTGCTGA AGCCCGGTGC ACGGCTCGCG
GTGATCGACG GCTTCCTGCT GCGCGAGAAG CCCGGCCGCA GCGCCGGCTG GCTGCACCGC
CTGTGGGCCG ACAGCTGGGC CGTGCCCACG CTGGCGGTGC GGGACGATTT CGTCGCCGCG
CTGCGCGACC ACGGCTTCGA CGACATCGAG GTGCGGTCGC TGCGCTGGCG CGTGGCGCCC
AGCGCGCTGC ACATCCCGGT GCTGGCCACG CGCTTCGCGC TGGCCGAACT CTGGAAGGCG
CGCGGGCGGC TCAGCCCCTG GCGCCGCAAG CACATCGTGG CCAGCTACTG CGCGCTGGTG
CTGGGCCTTT TCTGGCGCGA TTTCGACTAC TGCATGGTGA CGGCCAGGCG CAGCGACTGA
|
|---|
| Protein sequence | MTKVFQPDFR PAATRTAPPA SAAPEASITK ADTQDYFTEV ADDYRAWSPS YNMHFGFWRL
GLNPLRREGM LVEMNRAVGR ALKLDQPRPA HQSAERRCVV DLGCGAGATA RTLVGDDPSL
FAVTVTNVAV QNRIALRLDA GAGVADRVAH IEADYTRTGL PTAQADGAWA VESACYASGT
AKADFVREAA RLLKPGARLA VIDGFLLREK PGRSAGWLHR LWADSWAVPT LAVRDDFVAA
LRDHGFDDIE VRSLRWRVAP SALHIPVLAT RFALAELWKA RGRLSPWRRK HIVASYCALV
LGLFWRDFDY CMVTARRSD
|
|---|
| |