| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1683 |
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| Symbol | |
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| ID | 7974751 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1815253 |
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| End bp | 1816470 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644792282 |
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| Product | polyhydroxyalkanoate depolymerase, intracellular |
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| Protein accession | YP_002943599 |
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| Protein GI | 239814689 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG4553] Poly-beta-hydroxyalkanoate depolymerase |
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| TIGRFAM ID | [TIGR01849] polyhydroxyalkanoate depolymerase, intracellular |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGTACC GGGCCTACCA GAACCAAGCC GACCTGCTTT CGCCCTCCCG GCTCGCAGCC
CAGTACCTCG GCCAGGCCCT CTGGAAGGAC GGCACCGACC GCACCATGAT GCGGCGCATG
GCCGCGCAGT TCGAGGTGTT TTCGCGCATG CGGCTGACCC ATTCGCGCCC CGACTACGGC
ATTGCCAGCG TGCCGGTCGA TGGCGTGGAA ACCCCGGTGC ACGAGGAGAA AACGCTGGTC
TCGCCCTTCG GCACGCTGCT GCATTTCCGC AAGGACACGC AGGCCGTGCA CCCGCCCGTG
CTGCTGGTCG CACCACTGTC GGGCCATTTC GCGACGCTGC TGCGCGAAAC CGTGCGCACC
CTGCTGCGCG ACCACGACGT GTACCTGACC GACTGGCACA ACGCGCGCGA CGTGCCGCTG
TGGCACGGCG GCTTCAGCCT GGACGACTAC ACGCTGCAGC TCATCCGGTT TCTCGAAGCC
GTCGGTCCCG GCGTGCACAT GGTCGCGGTC TGCCAGCCCT GCGTGTCCGC GCTGGCGGCC
ACGGCGCTGA TGGCCGAGGA CGACAACCCC GCCACGCCGC GCAGCCTCAC GCTCATGGCC
GGCCCGGTCG ATTGCCGCAT CAACCCCACG GGGGTGAACG AGCTCGCCAA CAGCAAGCCG
ATCGAGTGGT TCCGCCGAAA CCTCATCAGC CACGTGCCGT GGCCGCATGC CGGCATGATG
CGGCGCGTGT ACCCGGGCTT CCTGCAGCTC TCGGCCTTCC TGAGCATGAA CCCCGAGCGC
CACAAGAAGC AGTTCCAGGA CATGGTCCGC CACCTGGTCG AGGGCGACAC CGAGAAGGCC
CGCACCATCG GCACCTTCTA CGACGAGTAC CTGGCGGTGA ACGACCTGCC GGCCGAGTTC
TACCTGGAGA CCGTGGAGCG CGTGTTCCAG ACCTACGACC TGCCGCGCGG CGTGCTCACC
GTGGGCGAGC GTACGGTGAA CCCGGCGGCC ATCCGCCGCA CCGCGCTGCT CACGGTGGAA
GGCGAGCGCG ACGACATCTG CTCGGTCGGC CAGACGGTGG CGGCGCAAGA CCTCTGCACC
GGCATCCGGC CCTACCTCAA GGTGCATCAC CTGCAGGCCG GCGTGGGGCA CTACGGCGTT
TTCAGCGGCA GCAAGTGGAA CGCGCAGATC TACCCGCGCG TGCGCGAAAC CATCCACGCC
GCGGCCGAGC TGCACTGA
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| Protein sequence | MLYRAYQNQA DLLSPSRLAA QYLGQALWKD GTDRTMMRRM AAQFEVFSRM RLTHSRPDYG
IASVPVDGVE TPVHEEKTLV SPFGTLLHFR KDTQAVHPPV LLVAPLSGHF ATLLRETVRT
LLRDHDVYLT DWHNARDVPL WHGGFSLDDY TLQLIRFLEA VGPGVHMVAV CQPCVSALAA
TALMAEDDNP ATPRSLTLMA GPVDCRINPT GVNELANSKP IEWFRRNLIS HVPWPHAGMM
RRVYPGFLQL SAFLSMNPER HKKQFQDMVR HLVEGDTEKA RTIGTFYDEY LAVNDLPAEF
YLETVERVFQ TYDLPRGVLT VGERTVNPAA IRRTALLTVE GERDDICSVG QTVAAQDLCT
GIRPYLKVHH LQAGVGHYGV FSGSKWNAQI YPRVRETIHA AAELH
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