| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1670 |
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| Symbol | |
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| ID | 7974738 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1802816 |
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| End bp | 1804027 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644792269 |
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| Product | ribonuclease BN |
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| Protein accession | YP_002943586 |
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| Protein GI | 239814676 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1295] Predicted membrane protein |
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| TIGRFAM ID | [TIGR00765] YihY family protein (not ribonuclease BN) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.926786 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATACCGG CCATGAATCG TCGTCAGCTC TGGAGGGATC TTTCGCGCTT TCCGTGGGGC
AACACCGCGG CGGTGCTGGG CGAGCGTTTC CGCGAAGACC GGCTCGGCCT CACGGCCAGC
AGCCTCACCT TCACCACCAC CATCGCGATG GTGCCGTTCT TCACGGTGGC GCTGGCGCTC
TTCACCGTGT TCCCGATGTT CGCCAAGCTG CAGGGGCGGC TGCAGCGCTG GCTCATCGAG
AGCCTGATTC CCGACAACAT CGCGCGCCAG GTGCTGGGCT ACCTGAACCA GTTCTCGAGC
AAAGCCGGCG GCCTGGGCAT CGCGGGCCTG GTGGTGCTCT TGATCACCGC CATTGCGCTG
ATCCTCACCA TCGACAAGAC GCTCAACAAC ATCTGGCGCG TGCGCTCGCC CCGGCCCTTT
GCGCAGCGCG TGCTGATCTA CTGGGCCGCC ATCACGCTCG GGCCGCTGAT CCTGGCGGTG
AGCCTCTCGA CCACCTCGTA CGTGTTTGCC GCATCGCGCG ACGTGGTGGG CGGAAGCATC
CTCAAGCTGT TCTTCGACAC CTTCGAATTC GTGCTGCTCG CGGCCGGCAT GGCCTCGCTC
TACCACTACG TGCCCAACAC CAACGTGCGC TGGTCGCATG CCTGGGCCGG CGGCTTCTTC
GTGGCGGCCG CCATCGAGAT CGCCAAGCGC GTGCTGGGCT ACTACCTGAG CCTGGTGCCG
ACCTATTCGG TGCTTTACGG CGCCTTCGCC ACCGTGCCGA TCCTGCTGGT GTGGATCTAC
GTGGCCTGGG TGATCGTGCT GCTGGGCGCG GTCATCGCGG CCTACCTGCC GAGCCTGCTG
ACCGGCGTTG CGCGCCGGGG CGGGCGGGCC GGGTGGCCGC TGCAACTGGC CATGGAGGTG
CTGCAGCACC TGGCGCGGGC GCGCGCCACG CCGGCCAAGG GCATGGGCGC CACCGAACTC
GTCACGCGCA TGCGGGTCGA TGCGCTGCAG GTGGTGCCGG TGCTCGAAAC GCTGGTGGCG
CTGGACTGGA TCGCGCCGCT CGCCGAGGAA ACCGCCAATG AAGATCCGCG TTATGTGCTG
CTGGCCGATC CGTCCACGCC GATCGAGCCG CTGCTGAGGG AACTGCTGAT GCCGCGCGCC
GAACCGCTCG AAGACCTCTG GCGCAAAGGC CCGCTGCACT CGCTGCGCCT GGGCGACGTG
CTCCTGATTT GA
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| Protein sequence | MIPAMNRRQL WRDLSRFPWG NTAAVLGERF REDRLGLTAS SLTFTTTIAM VPFFTVALAL
FTVFPMFAKL QGRLQRWLIE SLIPDNIARQ VLGYLNQFSS KAGGLGIAGL VVLLITAIAL
ILTIDKTLNN IWRVRSPRPF AQRVLIYWAA ITLGPLILAV SLSTTSYVFA ASRDVVGGSI
LKLFFDTFEF VLLAAGMASL YHYVPNTNVR WSHAWAGGFF VAAAIEIAKR VLGYYLSLVP
TYSVLYGAFA TVPILLVWIY VAWVIVLLGA VIAAYLPSLL TGVARRGGRA GWPLQLAMEV
LQHLARARAT PAKGMGATEL VTRMRVDALQ VVPVLETLVA LDWIAPLAEE TANEDPRYVL
LADPSTPIEP LLRELLMPRA EPLEDLWRKG PLHSLRLGDV LLI
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