Gene Vapar_1648 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1648 
Symbol 
ID7974716 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp1781627 
End bp1782226 
Gene Length600 bp 
Protein Length199 aa 
Translation table11 
GC content63% 
IMG OID644792247 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002943564 
Protein GI239814654 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.298566 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGGGGG CGCGAGTGCC GAAGAAGATG GACCCGCAAC TGCGTTCGGA CGCACTGCAG 
AACCGCGAAC GGATCCTGCA AGTGGCAATT GCCGAACTGA CACGATCAGT GGACGTTCCG 
CTGAGCGCCA TCGCGAAGAA GGCCGGCGTT GGGCAAGCGA CCTTCTATCG AAACTTCCCC 
AGTCGAGACG CGCTGGTGTG GGAGGTTTAC CGCTACGAGA TGGCGCAGGT CGCGGACCTT 
GCCGAGCAAC TGCTCCAGAC CAGCCCGCCG CAACAAGCGC TGCGGGAATG GATGGACCGT 
CTCGCCCAGT ACGCCATGAC CAAGGCCGGC CTGGCCGATG CCTTGCGCCA AGCTTCCAGT 
GCGCCTGAGT GCTCGGAGGA GTCCCGATAT GCACCAGTGA TCGGCGCTGC TCAACGCCTG 
CTTCAGGCCA ACGAGAAAGC CGGAACCATT CGGCCAGGCG TCACCACGGA TGACTTTTTT 
CTGGCCATTG CAGGCATTTG GCAAATCGAC TCCAAGGGCG ACTGGCAACC ACGCCTGAAG 
CGACTCATGG ATCTCGTCAT GGACGGACTG CGCGCGGGTG CGCCCGCGCG CGCTTCCTAG
 
Protein sequence
MEGARVPKKM DPQLRSDALQ NRERILQVAI AELTRSVDVP LSAIAKKAGV GQATFYRNFP 
SRDALVWEVY RYEMAQVADL AEQLLQTSPP QQALREWMDR LAQYAMTKAG LADALRQASS 
APECSEESRY APVIGAAQRL LQANEKAGTI RPGVTTDDFF LAIAGIWQID SKGDWQPRLK 
RLMDLVMDGL RAGAPARAS