Gene Vapar_1645 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1645 
Symbol 
ID7974713 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1779399 
End bp1780376 
Gene Length978 bp 
Protein Length325 aa 
Translation table11 
GC content66% 
IMG OID644792245 
Producthypothetical protein 
Protein accessionYP_002943562 
Protein GI239814652 
COG category[S] Function unknown 
COG ID[COG3181] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.115103 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAGCA CTTGGCGCTA CGGCGCGGGC ATTGTCCTGC TCGCTTCGGC CAGGCTGGCC 
TCTGCAGACT TCCCAGACAA GCCCGTCACG CTGGTTGTTC CGTTCGCGGC CGGCGGCCCG
AGCGACAAGA TCGCCCGGGA CCTGGCCGAG GCACTGCGCA AGCCGCTCGG CCAGACCGTG
ATCGTCGACA ACGCCGCCGG TGCGGGAGGC ACGATCGGCT CGGCCAAGGT GGCGCGCGCC
ACGCCGGACG GCTATACGCT GCTGGTGCAT CACATCGGCA TGGCCACCGC ACCGGCGCTG
TATCGCAAGC TCCCCTACAA AGTGCCTGAT GACTTCGAAA TGCTGGGCCT GATCAACGAA
GCCCCATCGG TGGTGATCGG CAAGCCGAGC CTGGAAGCCA CCAGCTTCGC GGACTTGCGC
AAGTGGATTG CTGCGAACGG CGGAAAGGTC AACCTGGCCC ATGCAGGGCT GGGCTCCGCG
TCGCACCTGT GCGGCTTGAT GTTCCAGAGC GCCTTGAAGA CCAGCATGAC CCCGGTGCCC
TACAAGGGAA CCGCACCGGC CATGACGGAC CTCATCGGCG GCCAGGTCGA CCTCATGTGC
GAGCAGGCCA CCAACGCCGT GCCGCAGATC GAGGGCAAGA AGGTCAAGGT CTACGGCATC
ACGAGCCTGA AGCGCCTGCC GCTGCCATCG CTCAAGGACA CTCCCACGCT CGCGGAGTCC
GGGCTCAAGG ATTTCGACGT GCAGGTCTGG CACGGCTTGT ATGCGCCCAA GGGCACGCCG
CCCGCGGTGC TGGAAAAGCT GAACGCGGCG CTTCGCACCG CCCTGAAGGA TCCGGAACTC
ATCAAGCGCG AAGAGGCGCT GGGCCTCAGC GTGGTGAATG ACGACCGCCT GGCCGCGGCC
GGCCACCGGA AGTTCGTGGA AGCGGAGAAG GTCCGCTGGT CGAAGGTCAT CAAGGAAGCC
GGCGAATACG CTGACTGA
 
Protein sequence
MKSTWRYGAG IVLLASARLA SADFPDKPVT LVVPFAAGGP SDKIARDLAE ALRKPLGQTV 
IVDNAAGAGG TIGSAKVARA TPDGYTLLVH HIGMATAPAL YRKLPYKVPD DFEMLGLINE
APSVVIGKPS LEATSFADLR KWIAANGGKV NLAHAGLGSA SHLCGLMFQS ALKTSMTPVP
YKGTAPAMTD LIGGQVDLMC EQATNAVPQI EGKKVKVYGI TSLKRLPLPS LKDTPTLAES
GLKDFDVQVW HGLYAPKGTP PAVLEKLNAA LRTALKDPEL IKREEALGLS VVNDDRLAAA
GHRKFVEAEK VRWSKVIKEA GEYAD