| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1616 |
|---|
| Symbol | |
|---|
| ID | 7974845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1746154 |
|---|
| End bp | 1747035 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644792216 |
|---|
| Product | Prephenate dehydrogenase |
|---|
| Protein accession | YP_002943533 |
|---|
| Protein GI | 239814623 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0287] Prephenate dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGAGC AATTGGGATT GATCGGCTGC GGCCTCATGG GCGGCTCCTT TGCGCTCGCG
CTCAAGCGCG CGAAGCTCGT GAAACGCGTG GTCGGCTACA GCAAGTCGCC CTCCACCACC
GAGCGGGCGC GCCAGCTCGG CGTGATCGAC GTGGCGGCGC CTTCCGCGCT GCTGGCGGTC
TCGGGCTCCG ACCTCGTGCT GCTGGCGGTG CCGGTGGCGG CCTCGGAAGC CACCTTCAAG
GCCATCCGCC ATGGCATTTC GAGCGACACC CTCGTGATGG ACGTGGGTTC GACCAAGGGC
GACGTGATCG AAGCCGCGCG CAACGGCCTG CAGGACCAGT TCGCCCACTT CGTTCCGGCC
CACCCGATCG CCGGCAAGGA GGTGTCGGGC ATCGAGCACG CCGAGGCTTC GCTCTACGCC
GGCCGCAAGG TCGTGCTGAC GCCCGTCAAG GCCACGCTGC GCTCGAACGT GCAGCGCGCC
TCGCAGATCT GGAGCGGCAT CGGCGCCCAC GTCGTCACCA TGACGCACGA GGAGCACGAC
AGCGCCTTCG CGGCCGTGAG CCACCTGCCG CACCTGCTGG CCTTTGCCTA TCTCAACGCG
CTGATCGCGC AGCCGCAGGG CGACGATTTC CTGCGCCTTG CAGGGCCAGG CTTTCGCGAT
TTTTCGCGCA TTGCGGCCAG CGATCCGGTC ATGTGGCGCG ACGTGCTGCT CGCCAACCGC
GAGCAGGTGC TGCTGCAATC GCAGGCCTTG CGCAAGTCGC TCTGCGATCT GGAGGCGCTG
ATCACGGCCG GCGATGCCCA GGCGCTCGAG CACTCGATCG CCGCCGCCAG CAAGGCCCGC
GCCGCCTGGC AGCCCAACAC CGACGCGCCC CAGGACTCCT GA
|
|---|
| Protein sequence | MFEQLGLIGC GLMGGSFALA LKRAKLVKRV VGYSKSPSTT ERARQLGVID VAAPSALLAV
SGSDLVLLAV PVAASEATFK AIRHGISSDT LVMDVGSTKG DVIEAARNGL QDQFAHFVPA
HPIAGKEVSG IEHAEASLYA GRKVVLTPVK ATLRSNVQRA SQIWSGIGAH VVTMTHEEHD
SAFAAVSHLP HLLAFAYLNA LIAQPQGDDF LRLAGPGFRD FSRIAASDPV MWRDVLLANR
EQVLLQSQAL RKSLCDLEAL ITAGDAQALE HSIAAASKAR AAWQPNTDAP QDS
|
|---|
| |