Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1615 |
Symbol | |
ID | 7974844 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 1744140 |
End bp | 1746152 |
Gene Length | 2013 bp |
Protein Length | 670 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644792215 |
Product | bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase |
Protein accession | YP_002943532 |
Protein GI | 239814622 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0128] 5-enolpyruvylshikimate-3-phosphate synthase |
TIGRFAM ID | [TIGR00017] cytidylate kinase [TIGR01356] 3-phosphoshikimate 1-carboxyvinyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCTCGA CGGCATTCCT CGACATTCCT GCGCTGGCCG GGGCATCGGG CACCGTGCGG CTGCCGGGCT CCAAGAGCAT TTCGAACCGC GTGCTGCTGC TGGCCGCGCT GGCGAGCGGA ACCACCACGG TCCACGACCT GCTCGATTCC GACGACACCC GCGTGATGCT GGATGCGCTG CGCGCGCTCG GCTGCGGCAT CGATGCGGCC GGCAGCACGC TGCGCATCAC CGGCATCGGC GGCCAGCTGA AGCCAGGCGG GCCGATGCTG CCGCTTTTCC TCGGCAACGC CGGCACCGCG ATGCGTCCGC TGACCGCCGC GCTGTCGCTG CTCGGCGGCG AATTCGAATT GAGCGGCGTG CCGCGCATGC ACGAGCGGCC GATCGGCGAC CTGGTCGATG CGCTGACCCA GCTCGGCTGC CGCATCGACT ACCTGGGCAA CCCCGGCTAC CCGCCGCTGC GCATCCGCCC GGTCGATCAC GGCGCGCTGG TGCTGGATGC GCCGATCCGC GTGCGCGGCG ATGTCTCGAG CCAGTTCCTG ACCGCGCTGC TCCTCGCGCT GCCTCTCGCC GCCCGCAAGG ACATCGTGAT CGAGGTAGTC GGCGAGCTGA TCTCCAAGCC CTACATCGAG ATCACGCTCA ACCTGCTGGC GCGCTTCGGC ATTGCCGTGC AGCGCGAGGG CTGGGAGCGC TTCACCATCC CCGCGGGCAG CCGCTACAGC TCGCCGGGCG ACATCCACGT CGAGGCCGAC GCTTCCTCTG CCAGCTATTT CATCGCGCTC GGCGCCATTG CCACGGGTGC TTCCGGCCAG GACAGCATCC GGATCGAAGG CGTGGGCGCC GATTCGATCC AGGGCGACAT CCGCTTCATC GAGGCGGCGC GGCAAATGGG CGCGCAGGTC GACAGCGGGC CGAACTGGCT CGACGTGCGC CGCGGCGCCT GGCCGCTCAA GGCCATCGAC CTGGACGCCA ACCACATCCC CGATGCCGCG ATGACGCTGG CCGTGATGGC GCTCTATGCC GACGGCCCCA GCACCCTGCG CAACATCGCC AGCTGGCGGG TCAAGGAAAC CGACCGCATC GACGCCATGG CCAACGAACT CCGGAAGCTC GGCGCCACTG TCGACTCCGG CCCCGATTTC ATCCGGGTCC ATCCGCTGGA GCGCCCGGGC TGGCAGGCGG CAAGCATCCG CACCTACGAC GACCACCGCG TGGCCATGTG CTTTTCGCTC GCGGCCTTCA ATCCGGCGGG CTTGCCGGTG CGCATCCTGG AGCCGCACTG CGTCGCCAAG ACCTTCCCGG ACTATTTCGA GACGCTGTTC TCGGTGGCCC AGGCGCCCGA GGTGCCGGTG ATCTGCATCG ACGGCCCCAC CGCCTCGGGC AAGGGCACGC TCGCGGCCGA GGTGGCGCGC CTGCTGGGTT ACCACTACCT CGATTCAGGT TCGCTCTACC GCGTGACCGG CCTGGCCATG CGGCGCGCCG GGCTCGGCGC CGAACCGCAG CACGAGGCGC AGATCGCCGC CCTGGCGGCC GCCCTGCCAC TGCATTTCAC CGAGGGCAAG GTGCTGCTGG GCGGCGAGGA CGTGAGCGAC GAAATCCGCA CCGAAGCCGC CGGCATGGAT GCCTCCCGCG TCTCCACGCT TCCCGCGGTG CGCGCAGCGC TCCTGGCCCT GCAGCAGCGC TTTCGGCAGC TCCCGGGGCT GGTCGCCGAC GGCCGCGACA TGGGCACCGT GATCTTCCCC GACGCGGCGC TCAAGGTCTT TCTCACGGCC AGCGCCGCCC AGAGGGCCGA ACGCCGGCAT AAGCAGTTGA TTTCAAAGGG TATTTCAACT ACACTTGACA GTCTTCGCTC CGACTTGGAA GCGCGCGACG CCCGGGACTC GTCCCGCAGC GTCGCTCCGC TCAAGCCGGC GCAGGATGCC CGCCACCTCG ACAACTCCCA GCTGTCCATC GAGCAATCGA TCGACCAGGT GCTGAACTGG TGGCAGGAAA AACAGCCGTT CAAGCCCGCT TGA
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Protein sequence | MFSTAFLDIP ALAGASGTVR LPGSKSISNR VLLLAALASG TTTVHDLLDS DDTRVMLDAL RALGCGIDAA GSTLRITGIG GQLKPGGPML PLFLGNAGTA MRPLTAALSL LGGEFELSGV PRMHERPIGD LVDALTQLGC RIDYLGNPGY PPLRIRPVDH GALVLDAPIR VRGDVSSQFL TALLLALPLA ARKDIVIEVV GELISKPYIE ITLNLLARFG IAVQREGWER FTIPAGSRYS SPGDIHVEAD ASSASYFIAL GAIATGASGQ DSIRIEGVGA DSIQGDIRFI EAARQMGAQV DSGPNWLDVR RGAWPLKAID LDANHIPDAA MTLAVMALYA DGPSTLRNIA SWRVKETDRI DAMANELRKL GATVDSGPDF IRVHPLERPG WQAASIRTYD DHRVAMCFSL AAFNPAGLPV RILEPHCVAK TFPDYFETLF SVAQAPEVPV ICIDGPTASG KGTLAAEVAR LLGYHYLDSG SLYRVTGLAM RRAGLGAEPQ HEAQIAALAA ALPLHFTEGK VLLGGEDVSD EIRTEAAGMD ASRVSTLPAV RAALLALQQR FRQLPGLVAD GRDMGTVIFP DAALKVFLTA SAAQRAERRH KQLISKGIST TLDSLRSDLE ARDARDSSRS VAPLKPAQDA RHLDNSQLSI EQSIDQVLNW WQEKQPFKPA
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