| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1611 |
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| Symbol | |
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| ID | 7974840 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1740284 |
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| End bp | 1741462 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644792211 |
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| Product | tetratricopeptide repeat protein |
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| Protein accession | YP_002943528 |
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| Protein GI | 239814618 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2956] Predicted N-acetylglucosaminyl transferase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACTTTG ATCCCAGCTG GCTGCTGATC AGCCTGCCCG TCGCCTTTGT GCTGGGCTGG
CTCGCCTCGC GCTTCGACAT CCGGCAGCTC AAGCTCGAGA ACCGGCAAGC CCCCAAGGCG
TATTTCCGCG GCCTCAACTT TCTTCTCAAC GAACAGCAGG ACCAGGCCAT CGACGCCTTC
ATCGAGGCCG TGCAGAACGA CCCCGACACG CAGGAGCTGC ACTTCGCGCT CGGCAACCTG
TTTCGCCGGC GCGGCGAATA CCAGCGTGCG GTGCGCGTGC ACGAGCATCT GCTGGGGCGC
GGCGACCTGA GCCGCAGCGA CCGCGAGCGC GCCCAGCACG CGCTGGCACA GGATTTCCTG
CGCGCCGGGC TGCTCGACCG CGCCGAAGCC GCGCTGCAAA AACTCGAAGG CACACGCTAC
GAGAACGAGG CGCGGCTTTC GCTCCTGGCC ATCTACGAAC GATCGCGCGA ATGGGCCCAG
GCCGCCGCCG TGGCACAGAA GCTCGACGAA TCCGACCAGG CCAGCTACAG CACGCGCCGA
GCCCACCACC TTTGCGAGCA GGCCTCCGAG CAGGTGGCGG CCGGCGACCT GGCCGCGGCC
GGCCGGCTGC TCTCCGAAGC GGTGGCGCTG GCCCCGCAGG CGCCCCGCCC CGCCATCGAC
TCCGCCACGC TGCAACTGCG CAATGGCGAC GGCGCCAAGG CCTTCGATAC CCTCGTCGCG
CTGAGCGACA CCGCGCCGCT CGCCCTGCCG CTGTATGCCG CCGCGCTGCA GCAGGCCGCG
GTCGCCGCCC ACCGCGAGGG CGAAGCACTC GCGCTGCTGC AGCGGCACTA TGCCGATTCG
CCCTCGATCG ACGTGCTCGA AGCGCTGATC GCGCTCGGCG GCTCGCCGAC CAGCGCGATT
CCGGCGGCCA ACGGCCAGCC GCTCGCTCCG CGCGACGGCT ACATCGCACA CCTCGCCCAG
CAGCCCTCGC TGGTGGCCGC CTCGCGCTGG CTGGCCGGCG AGCGCTTCGA GCACGAGCAG
TTCCACCCGC AGGTGCAGCG CGCGCTCGAC CAGGCCACCC GGCCGCTGAT GCGCTACCGC
TGCGCTGCAT GCGGCTTCGA GGCGCACCAG CACTTCTGGC ACTGCCCCGG TTGCCAGGCC
TGGGACAGCT ATCCGCCGCG GCGCGTCGAG GAGCTCTGA
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| Protein sequence | MDFDPSWLLI SLPVAFVLGW LASRFDIRQL KLENRQAPKA YFRGLNFLLN EQQDQAIDAF
IEAVQNDPDT QELHFALGNL FRRRGEYQRA VRVHEHLLGR GDLSRSDRER AQHALAQDFL
RAGLLDRAEA ALQKLEGTRY ENEARLSLLA IYERSREWAQ AAAVAQKLDE SDQASYSTRR
AHHLCEQASE QVAAGDLAAA GRLLSEAVAL APQAPRPAID SATLQLRNGD GAKAFDTLVA
LSDTAPLALP LYAAALQQAA VAAHREGEAL ALLQRHYADS PSIDVLEALI ALGGSPTSAI
PAANGQPLAP RDGYIAHLAQ QPSLVAASRW LAGERFEHEQ FHPQVQRALD QATRPLMRYR
CAACGFEAHQ HFWHCPGCQA WDSYPPRRVE EL
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