| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1609 |
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| Symbol | |
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| ID | 7974838 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1738611 |
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| End bp | 1739579 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644792209 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_002943526 |
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| Protein GI | 239814616 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCACA AGTTCGGCAT TGCACTGGCT GGCCTCACCC TTGGCGCCGC AGCCTTCGCG
CAAACCAAGT GGGACCTGCC CACCGCCTAC CCGGCGACCA ACTTCCACAC CGAGAACATC
ACCCAGTTCG CCAACGATGT CGAAAAGGGC AGCGGCGGCA AGCTCAAGAT CACCGTGCAT
GCCAACGCCT CGCTGTTCAA GGCGCCTGAA ATCAAGCGCG CAGTGCAGGG CGGGCAGGCG
CAGCTCGGCG AGATCCTGCT GGTCAACTAC CAGAACGAAT GGCAGATGTT CGGCGCCGAT
GGCATTCCCT TCCTCGCCGA CAGCTACGAC GCCGCCTGGA AGCTCTATCA GGCGCAGAAG
CCCGCGCTCG AAAAGAAGCT GGCCGAGCAA GGCATCGTGC TGCTCTACAC GGTGGCCTGG
CCGCCGCAGG GCATCTTCGT GAAGAAGGAA ATCGCTTCGG CCGCCGACCT CAAGGGCGTG
AAGTGGCGCG CCTACAGCCC CGCCACCGCG CGCATCGGCG AACTGGTCGG CGCACAGCCG
GTCACGGTGC AGCAGGCCGA GCTCTCGCAG GCCATGGCCA CGGGCGTGAT CGAGTCGTAC
ATGTCGTCGG GCTCCACCGG CTACGACACC AAGACCTACG AATACATCAA GAACTTCTAC
GACACGCAGG CCTGGCTGCC CAAGAACGCG GTGCTCATGA ACAAGAAGGC CTTCGACGCG
ATCGACAAGC CCACGCAGGA CGCGGTGCTC AAGGCCGCCG CCGATGCGGA GAAGCGCGGC
TGGGAGCTCT CGAAGAAGAA GAACCTCGAG TACCTGGACC TGCTCAAGAA AAATGGCATG
ACCGTGCACG CGCCTTCCGC GGCCCTCAAG GCCGACATGA AGAAGGTCGG CGACACCATG
CTCAAGGAAT GGCTGGAAAA GGCCGGGCCC GAGGGCCAGG CGGTGGTCGA CGCGTACAAG
AAGATGTGA
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| Protein sequence | MNHKFGIALA GLTLGAAAFA QTKWDLPTAY PATNFHTENI TQFANDVEKG SGGKLKITVH
ANASLFKAPE IKRAVQGGQA QLGEILLVNY QNEWQMFGAD GIPFLADSYD AAWKLYQAQK
PALEKKLAEQ GIVLLYTVAW PPQGIFVKKE IASAADLKGV KWRAYSPATA RIGELVGAQP
VTVQQAELSQ AMATGVIESY MSSGSTGYDT KTYEYIKNFY DTQAWLPKNA VLMNKKAFDA
IDKPTQDAVL KAAADAEKRG WELSKKKNLE YLDLLKKNGM TVHAPSAALK ADMKKVGDTM
LKEWLEKAGP EGQAVVDAYK KM
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