| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1607 |
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| Symbol | |
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| ID | 7974836 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1736786 |
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| End bp | 1738087 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644792207 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_002943524 |
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| Protein GI | 239814614 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGACA TTGCCGTTGC GGCCCTGCTG ATTGGCGCAC TCTTCCTGAT CCTGGGCAGC
GGCGTGTGGA TCGGCCTCAC GCTCTCGGGC GTGGCGTGGA TCGCCATGCA GATCTTCTCG
TCGCGGCCCG CGGGCGACGC CATGGCCGTG ACCATCTGGG GCTCGGCCTC GAGCTGGACG
CTCACCGCCT TGCCGCTGTT CATATGGATG GGCGAGATCC TGTTCCGCAC GCGGCTGTCG
CAGGACATGT TCAAGGGCCT CGCGCCCTGG ATGCAAAGCC TGCCGGGCCG GCTGCTGCAC
ACCAACGTGG TGGGCTGCGC GGTGTTCGCG GCGGTGTCGG GCTCGAGCGC CGCCACCTGC
GCCACCATCG GCAAGATGAG CCTGCCCGAG CTCAAGCGCC GCGGCTATCC GGACGACATG
GTGATCGGCA CGCTGGCCGG CGCCGGCACG CTGGGCCTCC TGATCCCGCC CTCGATCATC
ATGATCGTCT ACGGCGTGAG CGCCGACGTG TCGATCGCCC GGCTGTTCAT TGCGGGCGTG
ATCCCGGGCA TCCTGCTCGC GCTGCTGTTC TCGGGCTACA TCGTGTTCTG GGCGCTGCGC
AACCCCGACC TTATTCCGCC GGCCGATGCG AAACTGCCCT TCGCCCAGAA GCTCAAGGCT
TCGATGTCGC TGATCCCGGT CGCGCTCCTG ATCCTGTCGG TGCTCGGGTC CATCTACGCG
GGCATTGCCA CGGCCACCGA AGCGGCGGCC GTGGGCGTGG TCGGGGCCAT GGTCATTTCG
GGCGCGCAGG GCTCGCTGAA CCGGCACAGC TTCAAGGAAG CGCTGCTCGG CGCCACGCGG
CTCTACTGCA TGATGGCGCT GATCCTCGCG GGCGCGGCCT TCCTCACGCT CGCCATGGGC
TACATCGGCC TGCCGCGCCA CCTGGCCGAA TGGATCGGCT CGCTCGGGCT CTCGAAGTTC
CAGCTGATCG CGATGCTCGC GGCGTTCTAC GTGGTGCTGG GCTGCTTCCT CGATGGCATC
TCGATGGTGG TGCTCACCAT GGGCGTCATC ATGCCGACGG TCAACGCCGC CGGCATCGAC
CCGGTGTGGT TCGGCATCTT CATCGTGCTG GTGGTCGAGA TGGCGCAGAT CACGCCGCCC
GTGGGCTTCA ACCTGTTCGT GCTGCAGGGC ATGACCGGAA AAGACCTGCT CTACATCGCA
CGCGTCACGC TGCCGATGTT CTTCCTGATG GTGGCGGCCG TGCTGATCAT CTACTTCGTG
CCGCAGCTGG TCACCTGGCT GCCGCAGCAG ATGGCGCCCT GA
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| Protein sequence | MSDIAVAALL IGALFLILGS GVWIGLTLSG VAWIAMQIFS SRPAGDAMAV TIWGSASSWT
LTALPLFIWM GEILFRTRLS QDMFKGLAPW MQSLPGRLLH TNVVGCAVFA AVSGSSAATC
ATIGKMSLPE LKRRGYPDDM VIGTLAGAGT LGLLIPPSII MIVYGVSADV SIARLFIAGV
IPGILLALLF SGYIVFWALR NPDLIPPADA KLPFAQKLKA SMSLIPVALL ILSVLGSIYA
GIATATEAAA VGVVGAMVIS GAQGSLNRHS FKEALLGATR LYCMMALILA GAAFLTLAMG
YIGLPRHLAE WIGSLGLSKF QLIAMLAAFY VVLGCFLDGI SMVVLTMGVI MPTVNAAGID
PVWFGIFIVL VVEMAQITPP VGFNLFVLQG MTGKDLLYIA RVTLPMFFLM VAAVLIIYFV
PQLVTWLPQQ MAP
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