| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1605 |
|---|
| Symbol | |
|---|
| ID | 7974834 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1733338 |
|---|
| End bp | 1736289 |
|---|
| Gene Length | 2952 bp |
|---|
| Protein Length | 983 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644792205 |
|---|
| Product | putative monovalent cation/H+ antiporter subunit A |
|---|
| Protein accession | YP_002943522 |
|---|
| Protein GI | 239814612 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1009] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit |
|---|
| TIGRFAM ID | [TIGR00940] Tmonovalent cation:proton antiporter
[TIGR00943] monovalent cation:proton antiporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCTGG TCTTTCTCGT CGCACTCCCC TTCATTGCCA GCGTGCTGGC CGCGTTGATG
CCGTCGAACG CGCGCAACCG GGAGTCGACG CTGGCGGGGC TCGTGGCACT GGGCTGCGCG
CTGCAGACCG CATGGTTCTT TCCGCAGATC GCGCGCGGCA ACGTGCTGCG CCAGGAGATC
GCGTGGCTGC CCGAGCTCGG GCTCAACCTC GTGTTCCGCA TGGACGGCTT TGCCTGGCTG
TTCTGCATGC TGGTGCTCGG CATCGGCACG CTGGTGGTGC TCTATGCGCG CTACTACATG
TCGGCGTCCG ATCCGGTGCC GCGCTTCTTC TCTTTCTTTC TCGCCTTCAT GGGCGCGATG
ACGGGCGTGG TGCTCTCGGG CAACCTGATC CAGCTGGTGC TGTTCTGGGA GCTCACCAGC
CTGTTCTCCT TCCTGCTGAT CGGCTACTGG CACCACCGGC GCGACGCGCG GCGCGGCGCG
CGCATGGCGC TCACGGTCAC CGGTGCCGGC GGGCTTTGTT TGCTCGCGGG CGTGATCGTG
CTGGGCCGCA TCGCGGGCAG CTACGAGCTC GACGTGGTGC TCGCCTCGGG CAACGAGATC
CGCGCGCATG CGCTCTATCC GGCGGCCCTG GTGCTGATAT TGCTGGGCGC CTTCACCAAG
AGCGCGCAGT TCCCGTTCCA CTTCTGGCTG CCGCGCGCCA TGGCGGCGCC CACGCCGGTC
TCGGCCTACC TGCATTCGGC CACCATGGTG AAGCTTGGCG TGTTCCTGAT GGCGCGGCTG
TGGCCGGTGC TGTCGGGCAC CGAAGAGTGG TTCTGGCTGG TGGGCGGCGC GGGCGCGATC
ACGCTGCTGC TCGGCGGCTT CGTCGCGATG TTCCAGCGCG ACCTGAAGGC ATTGCTCGCG
TACTCGACCA TCTCGCACCT CGGGCTCATC ACGCTGCTGC TGGGGCTGAA CAGCCCGCTG
GCGGCAGTGG CGGCGGTGTT CCACATCATC AATCACGCGA CCTTCAAGGC ATCGCTCTTC
ATGGCGGCCG GCATCATCGA CCACGAGAGC GGAACGCGCG ACATCCGCAA GCTCAGCGGG
CTGCTGCGGC TGATGCCGAT CACCGGCACG CTGGCGATCA TCGCGAGCGC ATCGATGGCC
GGCGTGCCGC TGCTCAACGG CTTTCTCTCG AAGGAAATGT TCTTTGCCGA GACCGTGTTC
ATCCAGGCGA CGCCGTGGAT CAGCCTGAGC CTTCCGGTCA TTGCCACCGT GGCGGGCGTC
TTCAGCGTGG CCTATTCGGC GCGCTTCGTG TTCGACGTGT TCTTCGGCCC GCCCTGCGGT
CCCGAGGTGC CGAGGCAGCC GCACGAACCG CCGCACTGGA TGCGCGTGCC GGTCGAGCTG
CTGGTGCTGG TCTGCCTGGT GGTGGGCGTG GCGCCGGCCT GGTCGGTCGG CACGCTGCTG
GCCACGGCCG CCACGCCGGT GGTCGGCGGC GTGCTGCCCG AATACAGCCT GGCCGTATGG
CACGGCTTCA ACCTGCCGCT GGCGATGAGC TTCGTGGCGC TGGCGGGTGG CATGGCGCTC
TACCTGTCGC AGCGCCGCCG CCGCGCGGAG GGCAAGCTCG AACACACGCC GCTCCTGCAC
CGCTTCGACG GCCAGGCCAT CTTCGAGCAC CTGCTCGCGC AGCTCAGCGA GGCCGGCCGG
CGCAGCCGGC GCCTGCTGGG CACGCGGCGC ATGCAGTCGC AATTGCTGCT CTTGATCGCG
GTGGCGGCGG CGGGCGCCGC GGCTTCGCTC TGGACCGCAC CCGTCGCGCG CGGCGACCGC
GAGCTGCTGC CCTTCTCGCC GATGTTCGCG ATGACCTGGC TGATCGGCGG CGTCTGCGCG
CTGGCGGCGG CATGGCAGGC CAAGTTCCAC CGCCTGGCCG CGCTGATGCT GGCCTCGGGC
GCCGGATTGG TGTGCTGCGT GACCTACATC TGGTTCTCGG CACCCGACCT GGCGCTGACG
CAGCTCGTGG TGGAGGCCGT GACCACGGTG CTGATCCTGC TGGGCCTGCG CTGGCTGCCG
ATGCGCAGCA AGGACGCGGT CCAGCCAGCG CGCGCCAGGC TGCGCCCCTG GGGCCGGCGC
GGGCGCGACC TGCTGGTGGC GGCCGGCGTC GGCAGCGGCA TGGCGGCGCT GGCGTGGCTC
ATGATGACGC GGCCGTTTCC GCAAAGCATC TCGCCCTTCT TTCTCGAGCA TGCGCTGGCC
GAGGGCGGCG GCACCAACGT GGTCAACGTG ATGCTGGTCG ACTTCCGCGG CTTCGACACC
TTCGGCGAGA TCACCGTGCT GGGCGTGGTG GCGCTCACGG TCTATGCACT GCTGCGCCGC
TTCCGGCCGG CGCGCGAATC GATGGCCCTG CCGGTGCAGC AGCGCGCGCA GGCCGACGAT
GGCAGCAGCG ACCTGCTGAA CCCGCGCCTG GCCAAGGACA CGGCCGTGGG CTACCTGATG
GTGCCGGCCG TGCTGGTGCG GCTGCTGCTG CCGCTCGCGG TGCTGGTGTC GGTCTATTTC
TTCATGCGCG GGCACAACGC ACCCGGCGGC GGCTTCGTCG CGGGGCTGGT GATGTCGGTG
GCGCTGGTGT TGCAGTTCAT CGTCTCGGGC ACCGAGTGGG TGGAAGAGCA CCTGCGCATC
TATCCGCGCC GCTGGATCGC CGCCGGCCTG CTGCTCGCGC TGGCCACGGG CAGCGGCGCG
GTGCTGTTCG GCTATCCGTT CCTGACCACC CACACCGCGC ACCTGCATCT TCCCGTGCTG
GGCGAGCTGC ACGTGCCGAG CGCCCTGTTC TTCGACATCG GCGTGTTCGC GCTGGTGCTG
GGCGCCACCA TGCTGATCCT CACCGCGCTG GCCCACCAGT CGGTGCGCAG CCACCGCTGG
GCCGACGAGC AGCGCGAGAA GGAAGCCGAA GCCGCTGCGG CCGCCGTCGC CATGCCGGAA
GGAGCGCGCT GA
|
|---|
| Protein sequence | MPLVFLVALP FIASVLAALM PSNARNREST LAGLVALGCA LQTAWFFPQI ARGNVLRQEI
AWLPELGLNL VFRMDGFAWL FCMLVLGIGT LVVLYARYYM SASDPVPRFF SFFLAFMGAM
TGVVLSGNLI QLVLFWELTS LFSFLLIGYW HHRRDARRGA RMALTVTGAG GLCLLAGVIV
LGRIAGSYEL DVVLASGNEI RAHALYPAAL VLILLGAFTK SAQFPFHFWL PRAMAAPTPV
SAYLHSATMV KLGVFLMARL WPVLSGTEEW FWLVGGAGAI TLLLGGFVAM FQRDLKALLA
YSTISHLGLI TLLLGLNSPL AAVAAVFHII NHATFKASLF MAAGIIDHES GTRDIRKLSG
LLRLMPITGT LAIIASASMA GVPLLNGFLS KEMFFAETVF IQATPWISLS LPVIATVAGV
FSVAYSARFV FDVFFGPPCG PEVPRQPHEP PHWMRVPVEL LVLVCLVVGV APAWSVGTLL
ATAATPVVGG VLPEYSLAVW HGFNLPLAMS FVALAGGMAL YLSQRRRRAE GKLEHTPLLH
RFDGQAIFEH LLAQLSEAGR RSRRLLGTRR MQSQLLLLIA VAAAGAAASL WTAPVARGDR
ELLPFSPMFA MTWLIGGVCA LAAAWQAKFH RLAALMLASG AGLVCCVTYI WFSAPDLALT
QLVVEAVTTV LILLGLRWLP MRSKDAVQPA RARLRPWGRR GRDLLVAAGV GSGMAALAWL
MMTRPFPQSI SPFFLEHALA EGGGTNVVNV MLVDFRGFDT FGEITVLGVV ALTVYALLRR
FRPARESMAL PVQQRAQADD GSSDLLNPRL AKDTAVGYLM VPAVLVRLLL PLAVLVSVYF
FMRGHNAPGG GFVAGLVMSV ALVLQFIVSG TEWVEEHLRI YPRRWIAAGL LLALATGSGA
VLFGYPFLTT HTAHLHLPVL GELHVPSALF FDIGVFALVL GATMLILTAL AHQSVRSHRW
ADEQREKEAE AAAAAVAMPE GAR
|
|---|
| |