| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1603 |
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| Symbol | |
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| ID | 7974832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1731282 |
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| End bp | 1732988 |
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| Gene Length | 1707 bp |
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| Protein Length | 568 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644792203 |
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| Product | putative monovalent cation/H+ antiporter subunit D |
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| Protein accession | YP_002943520 |
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| Protein GI | 239814610 |
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| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0651] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGGCC AACTGGTCCA GTTGCTCGAC CGCCTGCTCG AGTTCAGCAT GCCGCACCTC
GTCGCGGTGC CGATCCTGGT GCCGCTGCTC ACGGCCGCAC TGATGCTGCT GCTGGGCGAA
AGCCGGCGCC GCACCAAGTC GGCGTTGAGC GTGGTCTCGG GCCTGGTGGG CCTGCTGGCG
GCGCTGGCAC TGCTGCGCTG GGTGAACGCG CCCGAGACCG GCGACGGCCC CGGCTCGGTC
GGCGTCTACC TGCCGGGCAA CTGGCGCGCG CCCTTCGGCA TCGTGCTGGT GGCCGACCGG
CTGTCGACCA TGATGGTGGC GCTCACGGGC GTGGTCGCCT TTGCGGCCTC GATCTATTCC
ACCTCGCGCT GGGACCGCGC CGGCGTGCAT TTCCATCCGC TGCTGCAATT GCAGCTCATG
GGCCTGAACG GCGCCTTCCT CACGGGCGAC CTGTTCAACC TGTTCGTCTT CTTCGAGGTG
ATGCTCGCGG CCTCCTACGG CCTGCTGCTG CATGGCTCGG GCCGGCTGCG GGTGCAGGCG
GGGCTGCACT ACATCGCCAT CAACCTGGCC GCATCGTCGC TCTTCCTGAT CGGCGCGGCG
CTGCTCTACG GCGCGACCGG CACGCTCAAC ATGGCCGACC TCGGCATGCG CATCGCGCAG
CTCGCGCCGG CCGACCGCGG CCTCGTGCAT GCGGCAGCCG CCATCCTGGC AACGGCGTTC
TTCGCCAAGG CCGGCGCCTG GCCGCTCAAC TTCTGGCTGG TGCCGGCCTA CAGCGCGGCG
GTGTCGCCGG TGGGTGCCGT GTTCGCGCTC CTGACCAAGC TCGGCGTCTA CACATTGCTG
CGGCTGTGGA CGCTGCTCTT CGCGCCGGAT GCCGGCAGCT CGGCGGCGTT CGGGCAATCC
GCGCTCCTCG CGATCGGGCT CGCGACGCTG TTCGCGGGTG CCATCGGCAT CGTGGGCACG
CAGCGGCTCT CCAACCTCGC GGGCTTCAGC GTGCTGGTGT CGGCGGGCAC GCTGCTCGCG
GCCATCGGGC TGGGGGAGCC GGCCGTGTGG GCCGGCGCGC TCTACTACCT GCTGAGCTCG
ACGCTGGCCG TGAGCGCCTT CTTCCTGCTG ACCGACATGA TCGAGCGCTG GCGCAATGCC
GGCATGAGCG TGGCGCCGCA CGAGAAGGCC GGCAATGCGC CTTTCCTCGC CGAAGACCTG
CGCGTGCTCG ACGACGTGAA CCTCGACGAC GAGGCGCAGG CGCTCTACGG CCGCGCGATT
CCGGCCGGCG TGGCCTTCCT GGGGCTGAGC TTCATCGGCT GCACGCTGCT GCTCGCGGGC
CTGCCGCCGC TGTCGGGCTT CGTGGGCAAG TTCGCGATGC TGTCGGGCGC GTTTTCCACC
GGCGGCACCT CGGTGCCCGC ATGGATCTTC CTGGCGCTGC TCGTCGTTTC GGGCCTGCTC
GCGCTGATTG CGCTGAGCCG CACCGGCATG CGCCACTTCT GGACCCAGCC GCATCCCACC
ATGCCGGCCC TGCCCGCGCT CGAGGTGCTG CCCGTGGCCG GATTGCTCGC GGCCAGCGTG
GCGCTCACGG TCTGGGCCGG CCCCGTCATG CGCCACGCCA TCACCACCGC CGAAGGACTG
CGCACGCCCA CCGCCTACCG CAATGCCGTG ATGGGCGCGC GGCAGGTGCC CAACCCCGCG
GGCCCCGCGA AAGGCCCGGC ACCATGA
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| Protein sequence | MTGQLVQLLD RLLEFSMPHL VAVPILVPLL TAALMLLLGE SRRRTKSALS VVSGLVGLLA
ALALLRWVNA PETGDGPGSV GVYLPGNWRA PFGIVLVADR LSTMMVALTG VVAFAASIYS
TSRWDRAGVH FHPLLQLQLM GLNGAFLTGD LFNLFVFFEV MLAASYGLLL HGSGRLRVQA
GLHYIAINLA ASSLFLIGAA LLYGATGTLN MADLGMRIAQ LAPADRGLVH AAAAILATAF
FAKAGAWPLN FWLVPAYSAA VSPVGAVFAL LTKLGVYTLL RLWTLLFAPD AGSSAAFGQS
ALLAIGLATL FAGAIGIVGT QRLSNLAGFS VLVSAGTLLA AIGLGEPAVW AGALYYLLSS
TLAVSAFFLL TDMIERWRNA GMSVAPHEKA GNAPFLAEDL RVLDDVNLDD EAQALYGRAI
PAGVAFLGLS FIGCTLLLAG LPPLSGFVGK FAMLSGAFST GGTSVPAWIF LALLVVSGLL
ALIALSRTGM RHFWTQPHPT MPALPALEVL PVAGLLAASV ALTVWAGPVM RHAITTAEGL
RTPTAYRNAV MGARQVPNPA GPAKGPAP
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