| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1593 |
|---|
| Symbol | |
|---|
| ID | 7974822 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1722450 |
|---|
| End bp | 1722947 |
|---|
| Gene Length | 498 bp |
|---|
| Protein Length | 165 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644792193 |
|---|
| Product | (2Fe-2S)-binding domain protein |
|---|
| Protein accession | YP_002943510 |
|---|
| Protein GI | 239814600 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2080] Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGTAG CTTTCACGGT CAACGGCCGA CCGGCCACGG TCGACGCGCC CCCCAATACC
TTCCTGGTGC ACGCCATCCG CGAGCATCTC CACCTGACCG GCACCCATGT CGGCTGCGAC
ACCGCCCAGT GCGGCGCATG CACCGTCCAC ATGAACGGGC GCGCGGTGAA GTCGTGCAAC
ATCCTGGTCG GGCAGGCGGC CGGTGCGCAA ATCACCACCA TCGAGGGCAT CGCCCAGCCC
GACGGCACCA TGCACCCCAT GCAGGCGGCC TTCAAGGAAT GCCACGGCCT GCAGTGCGGT
TTCTGCACCC CGGGCATGGT CATGAGCGCC ATCGACCTGT GCACCCACCA TCCCAGGTCG
AGCGAATCGG AGATCCGCGA ACTGCTCGAC GGCAACCTGT GCCGCTGCAC GGGCTACCAG
AACATCGTGA AGGCCGTGCA GATGGGCGGC GAGGCCATGG CCTCGGGCAC GCCGGTCAAG
ACCACCGCCA CGGTGTGA
|
|---|
| Protein sequence | MQVAFTVNGR PATVDAPPNT FLVHAIREHL HLTGTHVGCD TAQCGACTVH MNGRAVKSCN
ILVGQAAGAQ ITTIEGIAQP DGTMHPMQAA FKECHGLQCG FCTPGMVMSA IDLCTHHPRS
SESEIRELLD GNLCRCTGYQ NIVKAVQMGG EAMASGTPVK TTATV
|
|---|
| |