| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1579 |
|---|
| Symbol | |
|---|
| ID | 7974808 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1708828 |
|---|
| End bp | 1709775 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644792179 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_002943496 |
|---|
| Protein GI | 239814586 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGTAA AGGCGAAAGC CCAAAACAGT GCCCGCAATC GCGCCGTGCT GGGGCAGCTC
AGCGACATGG ACCTGCGCCT GCTCAAGGTG TTCAAGAGCG TGGTCGACTG CGGCGGCATG
GCGGCGGCCG AGCTGGAGCT CAACATCGGC ACCTCCACCG TGAGCCGGCA CGTGAAGGAC
CTGGAAACGC GGCTCGGCCT GGTGCTGTGC CGGCGCGGCC GCGCGGGCTT TGCGCTCACG
GCCGAGGGCC AGCGCGTGTA CGACGAGACG CTGCGCCTGC TGGCCTCGGT CGATGCCTTT
CGCGGCAGCA TCGACGACAT CCACAACCGC ATGGGCGGCC AGCTCGACGT GGCGCTGTTC
GACAAGACGG CGACCAATCC GAAGGCGCGC ATCGGCGAAG CCATCGCGCG CTTCACCGAA
CTGGCGCCGG AGGTGAACCT GGCGGTGCAT GTGGGCTCGA TCAACGCCAT CGAGCAGGGC
GTGCTGGAAG GCAATTTCCA GATCGGCATC ATCCCGGCGC ACCGGGCCTC GAAGAGCCTG
GTGTACGCCG ACCTGTTCGA CGAGACGATG CTGCTTTACT GCGGCAAGGG GCATCTGCTC
TTCGAGAGCA ACAACGCAAA GCTCACGTGG GCCAGGCTGC GCGAGCATCA CTTTGCGGGC
CTGGGCTACC ACTCGCCCAA CATGGAACTG AGCCATCGCG CGAAGCTGTC GCGCAAGGCG
ACGGGCTTCG ACCAGGAAGC GATTGCCACG CTGATTCTTT CGGGGCGCTT TCTCGGTTTT
TTGCCTGACC ACTACGCGCA GGTGTTCGAG GAGCGCGGGC TCATGAAGCC CGTGCTGCCG
GCGCGGTTCA ACTACGCGTG CCGGTTCGTG AGTTTGCTGC GCCGGTCGCC CAAGCCGTCA
CGGGCGGTGC TGGCGTTTCA GGAGTGTCTG GAGAAGGCGC ACAAGTAA
|
|---|
| Protein sequence | MQVKAKAQNS ARNRAVLGQL SDMDLRLLKV FKSVVDCGGM AAAELELNIG TSTVSRHVKD
LETRLGLVLC RRGRAGFALT AEGQRVYDET LRLLASVDAF RGSIDDIHNR MGGQLDVALF
DKTATNPKAR IGEAIARFTE LAPEVNLAVH VGSINAIEQG VLEGNFQIGI IPAHRASKSL
VYADLFDETM LLYCGKGHLL FESNNAKLTW ARLREHHFAG LGYHSPNMEL SHRAKLSRKA
TGFDQEAIAT LILSGRFLGF LPDHYAQVFE ERGLMKPVLP ARFNYACRFV SLLRRSPKPS
RAVLAFQECL EKAHK
|
|---|
| |