| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1573 |
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| Symbol | |
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| ID | 7974802 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1700798 |
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| End bp | 1702582 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644792173 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_002943490 |
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| Protein GI | 239814580 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAATTCA TTACGCAAAA CTTCGCCCCG ATCATGTTCG CGGGGCTGAT CGTGTTCCTG
CTGTTCGGCT TTCCGGTGGC ATTCAGCCTC GGCGCCTGCG GCCTGTTCTT CGGCTTCGTC
GGCGTGGAGC TCGGCCTCCT GCCCGAGGCG CTGCTGCAGG CGCTGCCGCT GCGGGTGTTC
GGCATCATGC AGAACGACAC GCTGCTGGCC ATTCCGTTCT TCACGCTCAT GGGGCTGATC
CTCGAGCGAA GCGGCATGGC CGAAGACCTG CTCGACTCGA TCGGCCAGCT CTTCGGCCCC
GTGCGCGGCG GCCTCGCGCT GGCCGTGATC TTCGTGGGTG CGCTGCTTGC GGCCACCACC
GGCGTGGTGG CGGCCTCGGT CATCTCGATG GGCCTGATCT CGCTGCCGAT CATGCTGCGC
TACGGCTATG ACCGGCGCAT CGCCTCGGGC GTGATTGCGG CCTCGGGCAC GCTGGCGCAG
ATCATCCCGC CTTCGCTGGT GCTGATCATC ATGGCCGACC AGCTCGGCCG CAGCGTGGGA
GACATGTACA AGGGCGCGTT CGTGCCGGGC TTCATGCTCA CGGCCATGTA CGCGGGCTAC
GTGATCCTGC TGGCCATCTT CAAGCCCAAG TGGGTTCCGG CCCTGCCGCT CGAGGCACGC
ACCTTCCGCG AGCCGAGCGG CAGCAGCGGC CTGCCCTCGC TGCTGGTGCT GACCACCGTT
GCCACCGCGG CGGCCGTGTT CTTTGCCGAG CACATTGCCG ATGTCCACAC CTGGTGGACC
GGCCAGCCCG TGACCAGCGT GGCCACTGAC GAAACCATCG TGGTGTCGAT GTGCGTCGGC
GTGATGCTGG CCTTCCTGAT CGCGGTGGCC AACCGCCTGC TGCGGCTGCG GCTGCTGTCG
CGCATCGCCG AGCGCGTGAC CTTCGTGCTG ATCCCGCCGC TGCTGCTGAT CTTCCTGGTG
CTGGGCACGA TTTTCCTCGG CGTGGCCACC CCCACCGAAG GCGGCGCCAT GGGTGCCCTG
GGCGCCTTCA TCATGGCCAT GGTGCGCGGA CGGCTCAGCA TGAGCCTGCT CAAGCAGGCG
CTCAACACCA CCACCAAGCT GTCGTGCTTC GTGGTGTTCA TCCTGATCGG CTCGACCATC
TTCAGCCTGG TGTTCCAGGG CGTGGACGGA CCGCGCTGGG TCGAGCACCT GCTGACCGGC
ATGCCCGGCG GCCAGCTCGG CTTCCTGATC CTGGTGAACG TGCTGATCTT CTTCCTCGCG
TTTTTCCTGG ACTTCTTCGA GCTCTCGTTC ATCGTGGTAC CGCTCCTGGC ACCCGTGGCG
CACAAGCTCG GCATCGACCT GATCTGGTTC GGCGTGCTGC TGGCTGTGAA CATGCAGACC
TCGTTCATGC ATCCGCCTTT CGGCTTCGCG CTGTTCTACC TGCGCAGCGT GGCGCCGACC
AAGGCCTACA ACGACAAGGT CACGAACGAA CGCATCGAGC CCGTCACCAC CATGCAGATC
TACTGGGGGG CGGTGCCCTT CGTGCTGATC CAGATCATCA TGGTCGGCCT GATCATCGCG
TTCCCGGCCA TCGTCTCGAG CGGGCTCGAC AAGGAGGTGG CAGTCGACCT CGACAAGATC
GGCGCCGAGA TGCAGGCCAA CATGCCGAAG GACGACTCCC AGCCCGCTCC CGAGCCGGCA
CCCGGCGCCT CGGCACCGGC CGGCGGCGAA GCGCCTGCGG GCGCGGAAGA AGACCCGATG
AAGGCCATGC AGGAACAGCT GGACCGGGAC GCGGGCAAGA AGTAG
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| Protein sequence | MEFITQNFAP IMFAGLIVFL LFGFPVAFSL GACGLFFGFV GVELGLLPEA LLQALPLRVF
GIMQNDTLLA IPFFTLMGLI LERSGMAEDL LDSIGQLFGP VRGGLALAVI FVGALLAATT
GVVAASVISM GLISLPIMLR YGYDRRIASG VIAASGTLAQ IIPPSLVLII MADQLGRSVG
DMYKGAFVPG FMLTAMYAGY VILLAIFKPK WVPALPLEAR TFREPSGSSG LPSLLVLTTV
ATAAAVFFAE HIADVHTWWT GQPVTSVATD ETIVVSMCVG VMLAFLIAVA NRLLRLRLLS
RIAERVTFVL IPPLLLIFLV LGTIFLGVAT PTEGGAMGAL GAFIMAMVRG RLSMSLLKQA
LNTTTKLSCF VVFILIGSTI FSLVFQGVDG PRWVEHLLTG MPGGQLGFLI LVNVLIFFLA
FFLDFFELSF IVVPLLAPVA HKLGIDLIWF GVLLAVNMQT SFMHPPFGFA LFYLRSVAPT
KAYNDKVTNE RIEPVTTMQI YWGAVPFVLI QIIMVGLIIA FPAIVSSGLD KEVAVDLDKI
GAEMQANMPK DDSQPAPEPA PGASAPAGGE APAGAEEDPM KAMQEQLDRD AGKK
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