| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1555 |
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| Symbol | |
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| ID | 7974784 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1680286 |
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| End bp | 1681221 |
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| Gene Length | 936 bp |
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| Protein Length | 311 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644792155 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002943472 |
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| Protein GI | 239814562 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.893749 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCTACA TCCTCAGGCG ATTTCTCTCG ACGCTGCCGG TGATGGCAGT GGTGGCGGTG
GTGGTGTTCC TGCTGATCCA CCTGTCGCCG GGCGACCCCG CGGCGCTGAT CGCGGGCGAC
CTGGCCTCGG TCGAAGACAT CGAGAAGCTG CGCGCCGCGC TGGGCCTGAA CCTGCCGCTG
TGGCAGCAGT TCGCGATCTG GCTCGGCAAG CTCTTCACGG GCGACCTCGG CACCTCGATC
TTCACGCAGG TGCCGGTGGC GCAGCTGCTC GCGCAGCGGC TGGAGCCCAC GGTGTCGATC
GCGGTGCTGA CCATGGCGCT CACGCTGGTG CTGGCGGTGC CGCTGGGCAC GCTCGCGGCC
TACCGCGCGG GCAGCTGGAT CGACCGGCTC GTGATGCTGT TCGCGGTGCT CGCGTTCTCG
GTGCCGGTGT TCCTGGTGGG CTACCTGCTG ATCTACGCCT TCGCGATCCA GCTGCCGTGG
TTTCCGGTGC AAGGCTACGT GCGCTTTTCC GACAGCCCCG GCCAATGGCT GCGCGGCCTG
GTGCTGCCCT GCGTGAACCT CGCGCTGGTG TACATCGCGC TCGTCACGCG CATGACGCGC
GCCACCGTGC TCGAGGTGCT GCATGAAGAC TACATCCGCA CCGCGCGCGC CAAGGGCCTG
GGTGTGCTGC CGGTGCTGGG CCATGCGCTG CGCAATGCGG CCATTCCCAT CGCCACCACG
GTGGGCGTGG GAATCGCCCT CTTGATCGGC GGCGTGGTGG TGACCGAGAC GGTGTTCGCC
ATTCCGGGCG TGGGCCGCCT CGTGATCGAT TCGGTGCAGC GCCACGACTA CCCGGTGATC
CAGAGCGTGC TGCTGCTGTC GGCCGGCGTG TACGTGCTGA TCAACCTGCT GATCGACCTG
AGCTACCGCT TGTTCGATCC GCGCATCACG TACTAG
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| Protein sequence | MGYILRRFLS TLPVMAVVAV VVFLLIHLSP GDPAALIAGD LASVEDIEKL RAALGLNLPL
WQQFAIWLGK LFTGDLGTSI FTQVPVAQLL AQRLEPTVSI AVLTMALTLV LAVPLGTLAA
YRAGSWIDRL VMLFAVLAFS VPVFLVGYLL IYAFAIQLPW FPVQGYVRFS DSPGQWLRGL
VLPCVNLALV YIALVTRMTR ATVLEVLHED YIRTARAKGL GVLPVLGHAL RNAAIPIATT
VGVGIALLIG GVVVTETVFA IPGVGRLVID SVQRHDYPVI QSVLLLSAGV YVLINLLIDL
SYRLFDPRIT Y
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