Gene Vapar_1553 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1553 
Symbol 
ID7974782 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp1678323 
End bp1679351 
Gene Length1029 bp 
Protein Length342 aa 
Translation table11 
GC content70% 
IMG OID644792153 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_002943470 
Protein GI239814560 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCACCCA TGTCCCATCT CGCGCTCGCG CCCGGCGAGC CGCTGCTCGA GGTCGACAAC 
CTGCGCACCC ATTTCCATAC GCTGGCCGGC GTGGTGCGCT CGGTCGACGG CGTTTCGTAC 
ACCGTGCGCG CGGGGCGCAC GCTCGGCGTG GTCGGCGAAT CGGGCTGCGG CAAGAGCGTG 
ACCGCGCTTT CCATCCTGCG GCTGGTGCCC ACGCCACCCG GGCGCCACAT GGGCACGGTG 
CGGCTGCGCG GCACCGACCT GATGCAGCTC GGCGAACGCG AGATGCGGCA GATCCGCGGC 
AACCGCATCT CGATGATCTT CCAGGAGCCG ATGACCTCGC TGAACCCGGT GCTCACCGTG 
GGCCGGCAGA TCGCCGAGAC GGTGCAGCTG CACCAGAAGG CCAGCCGCGC CGACGCGCTG 
CAGCGCGCGG TGGAAATGCT GCGCGTGGTG CAGATCCCCG AGCCCGAGCG GCGCGTGAAC 
GAGTACCCGC ACCAGCTCTC TGGCGGCATG CGCCAGCGCG TGATGATCGC GCTGGCCCTG 
GCCTGCAACC CCGAGGTGCT GATTGCCGAC GAGCCCACCA CCGCGCTCGA CGTGACGATC 
CAGGCGCAGA TCCTCGACCT CATCAAGCGG CTGCAGAAGG AGCTGGGCAT GGGCGTGGTG 
ATGATCACGC ACGACCTCGG CGTGGTGGCC GAGAGCTGCG ACCGCGTGGT CGTGATGTAT 
GCCGGCAAGA AGGTCGAAGA AGCCGACGTG GTCGACCTGT TCGACCGGCC GCTGCACCCC 
TACACGCGCG CGCTGATGGC CTCGATGCCG TCGATGAACA CCGCGAGCCC GCGGCTGGCC 
GAGATCCCGG GGCTGGTGCC GGCCGCGCAC GAGCTGGGCC GCGGCTGCGC CTTTGCGGCG 
CGCTGCAGCC AGGCGCGCGA ACGCTGCCGC GCCGAGACGC CGCACCTCAC ACTGCAGGGC 
GGCGACCACG TGGTGGCCTG CTTCGCCGTC GAAGAACAAT GGGCCGATGC CGCCGAGGTG 
AGCGCATGA
 
Protein sequence
MAPMSHLALA PGEPLLEVDN LRTHFHTLAG VVRSVDGVSY TVRAGRTLGV VGESGCGKSV 
TALSILRLVP TPPGRHMGTV RLRGTDLMQL GEREMRQIRG NRISMIFQEP MTSLNPVLTV 
GRQIAETVQL HQKASRADAL QRAVEMLRVV QIPEPERRVN EYPHQLSGGM RQRVMIALAL 
ACNPEVLIAD EPTTALDVTI QAQILDLIKR LQKELGMGVV MITHDLGVVA ESCDRVVVMY 
AGKKVEEADV VDLFDRPLHP YTRALMASMP SMNTASPRLA EIPGLVPAAH ELGRGCAFAA 
RCSQARERCR AETPHLTLQG GDHVVACFAV EEQWADAAEV SA