| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1542 |
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| Symbol | |
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| ID | 7973142 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1664985 |
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| End bp | 1667807 |
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| Gene Length | 2823 bp |
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| Protein Length | 940 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644792142 |
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| Product | DNA polymerase I |
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| Protein accession | YP_002943459 |
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| Protein GI | 239814549 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGACA AGAAAACGCT GCTGCTCGTC GATGGCTCGA GCTATCTCTA CCGCGCCTTC
CACGCCATGC CCGACCTGCG GGCCGTGCCC GGCGACCCGA AGAGCCCGGC GACCGGCGCC
ATCCGGGGAA TGATCAACAT GATGACGGCG CTGCGCCGCG AGGTGCGCGC CGATTACGCG
GCCTGCATCT TCGATGCGCC CGGCAAGACC TTCCGCGACG ACCTGTATCC CGAATACAAG
GCCAACCGCT CTCCCATGCC CGACGACCTG CGCAGCCAGA TCGACCCCAT CCACGAGGTG
GTCAAGCTGA TGGGCTGGCC GGTGCTGTGC GTGCCCGACA TCGAGGCCGA CGACGTGATC
GGCACGCTCG CCAAGACCGC GGCGCAGCAG GGCATCGAGG TGATCGTTTC GAGCGGCGAC
AAGGACCTGA GCCAGCTGGT GGACGAGCAC ATCACGATCA TCGACACGAT GAACGGCAAG
AAGCGCGACG TGGCGGGCGT TACAGCCGAA TTCGGCGTGC CGCCTACGTT GATGATCGAC
TACCAGACGC TGGTGGGCGA TGCCGTCGAC AACGTGCCCG GCGTCGAGAA GGTCGGCCCC
AAGACAGCCG CCAAGTGGCT GCTCGAATAC GGCTCGCTCG ACGCGCTGAT CGAGCGCGCG
GCCGAGGTCA AGGGCCAGGC CGGCGAGAAC CTGCGCAAGG CCCTCGACAA GCTCCCGCTG
AGCCGCCAGC TCGTCACCAT CCGCACCGAT TGCAACCTGG CCGCGCACGT CGCCGGCCTG
CCTTCGCTCG AAGGCCTGCC GGTGGGCGCG CCGCAGACCG CCGAGCTCAA GCCCTTCTAC
GAGAGGTTCG GCTTCAAGAG CCTGGTCAAG TCGCTCGAGG CGCTGGAAGT GCCGCCCGAG
CTGATCGAGG AAAACATCAA GAAGCAGATG GCCCGTGGCG CCGCTGCGAG CGCCGACCAG
GGCGGCCTCT TCGACGAATC GGCCGAGCTC GGCGCGCTGG AGGCCGCATC GCCCGCGAGC
AACCTGAAGT ACGACACCAT CACCACCTGG GAGCAGTTCG ATGCCTGGCT CGCCAAGCTG
GAAGCCGCCG AGCTGGCCGC CATCGACACC GAGACCACCT CGCTCGACGA GATGGTCGCG
CGCATCGTCG GCGTGAGCTT CAGCATCGAG CCCGGCGCGG CGGCCTACGT TCCACTGGCG
CACAACTATC CCGATGCACC CGCGCAATTG CCGTTCGACG AGGTGCTCGC CAGGCTCAAG
CCCTGGCTCG AAAACCCCGC GAAGAAAAAA CTCGGCCAGC ACATCAAGTA CGACCGCCAT
GTGTTCGCCA ACCACGGCAT CGAAGTGCAG GGCTATGCGC ACGACACCAT GCTGCAGAGC
TACGTGCTCG AGGCGCACCG GCCGCACGGG CTCGCGAGCC TGGCCGAACG CCACCTGGGC
CGCAGCGGCA TCTCGTACGA AGACCTGTGC GGCAAGGGCG CGCACCAGAT CCCGTTCAGC
CAGGTCGACA TCGCCAAGGC CGCCGAATAT TCGTGCGAGG ACAGCGACCA GACGCTCGAC
GTCCACCTCG CGCTGTGGCC GCAGATCGAG CGCGACGAGA AGCTGCGCTT CATCTACCAG
CTCGAGATGG ATTCGAGCGA GGCGCTCTAC CGCGTCGAGC GCAACGGCGT GCTGATCGAC
GCGCCCACGC TGGCCGCGCA GAGCCACGAG CTCGGCACGC GCATCATGGC GCTCGAGCAG
GAGGCCTACG AGATCGCGGG CCAGCCCTTC AACCTGGGTT CGCCCAAGCA GATCGGCGAG
ATCTTCTTCA CCAAGCTGGG CCTGCCGGTG GTCAAGAAGA CGCCGAGCGG CGCGCCGAGC
ACCGACGAGG AAGTGCTCGA GAAACTGGCC GAGGACTATC CGCTGCCGGC CAAGATCCTC
GAGCACCGCG GCCTGTCCAA GCTCAAGGGC ACCTACACCG ACAAGCTCGG CCAGCTCGCC
AACCCGCGCA CCGGCCGCGT CCACACGCAC TATGCGCAGG CCGTGGCGGT CACAGGCCGC
CTGTCGAGCA ACGATCCCAA CCTGCAGAAC ATCCCGATCC GCACGCCCGA AGGCCGCCGC
GTGCGCGAGG CCTTCATTGC ACCGCCCGGC AGCGTGATCG CAAGCGCCGA CTACTCGCAG
ATCGAGCTGC GCATCATGGC CCACATCAGC GGCGACGAGT CGCTGCTGCG CGCCTTCAGG
GAGGGCATCG ACGTGCACCG CGCCACCGCG GCGGAGGTGT TCGGCGCCAC GCCCGACCAG
GTGTCGAGCG AGCAGCGCCG CTATGCGAAG GTGATCAACT TCGGGCTCAT CTACGGCATG
AGCAGCTTCG GCCTGGCGCG CAACCTGGGC ATCGAGACCA AGGCCGCGGC CTCCTACATC
GACCGCTACT TTGCGCGCTA TCCGGGCGTG AAGGCGTACA TGGACGAGAC CAAGGCGCTG
GCCAAGGAAA AGGGCTATGT CGAGACCGTG TTCGGCCGGC GCCTGTACCT GCCCGAGATC
AATTCGCCCA ACGGCCCGCG CCGCGGCGGC GCCGAGCGCG CGGCCATCAA CGCGCCCATG
CAGGGCACGG CGGCCGACCT CATCAAGCTC AGCATGATCA AGGTACAGAA CGTGCTTGAC
GAAGAGAAGC GCGCCACCCG CATGATCATG CAGGTGCACG ACGAACTGGT GTTCGAGGTG
CCCGAGGCAG AGATCGAATG GGTGCGCACC GAAATCCCGC GCCTGATGGC CGGCGTGGCC
GAGCTCAAGG TGCCGTTGCT GGCCGAGATC GGCATCGGAC CCAACTGGGA CAAGGCGCAC
TGA
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| Protein sequence | MTDKKTLLLV DGSSYLYRAF HAMPDLRAVP GDPKSPATGA IRGMINMMTA LRREVRADYA
ACIFDAPGKT FRDDLYPEYK ANRSPMPDDL RSQIDPIHEV VKLMGWPVLC VPDIEADDVI
GTLAKTAAQQ GIEVIVSSGD KDLSQLVDEH ITIIDTMNGK KRDVAGVTAE FGVPPTLMID
YQTLVGDAVD NVPGVEKVGP KTAAKWLLEY GSLDALIERA AEVKGQAGEN LRKALDKLPL
SRQLVTIRTD CNLAAHVAGL PSLEGLPVGA PQTAELKPFY ERFGFKSLVK SLEALEVPPE
LIEENIKKQM ARGAAASADQ GGLFDESAEL GALEAASPAS NLKYDTITTW EQFDAWLAKL
EAAELAAIDT ETTSLDEMVA RIVGVSFSIE PGAAAYVPLA HNYPDAPAQL PFDEVLARLK
PWLENPAKKK LGQHIKYDRH VFANHGIEVQ GYAHDTMLQS YVLEAHRPHG LASLAERHLG
RSGISYEDLC GKGAHQIPFS QVDIAKAAEY SCEDSDQTLD VHLALWPQIE RDEKLRFIYQ
LEMDSSEALY RVERNGVLID APTLAAQSHE LGTRIMALEQ EAYEIAGQPF NLGSPKQIGE
IFFTKLGLPV VKKTPSGAPS TDEEVLEKLA EDYPLPAKIL EHRGLSKLKG TYTDKLGQLA
NPRTGRVHTH YAQAVAVTGR LSSNDPNLQN IPIRTPEGRR VREAFIAPPG SVIASADYSQ
IELRIMAHIS GDESLLRAFR EGIDVHRATA AEVFGATPDQ VSSEQRRYAK VINFGLIYGM
SSFGLARNLG IETKAAASYI DRYFARYPGV KAYMDETKAL AKEKGYVETV FGRRLYLPEI
NSPNGPRRGG AERAAINAPM QGTAADLIKL SMIKVQNVLD EEKRATRMIM QVHDELVFEV
PEAEIEWVRT EIPRLMAGVA ELKVPLLAEI GIGPNWDKAH
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