Gene Vapar_1533 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1533 
Symbol 
ID7973133 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1652053 
End bp1652919 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content70% 
IMG OID644792133 
Producthypothetical protein 
Protein accessionYP_002943450 
Protein GI239814540 
COG category[I] Lipid transport and metabolism 
COG ID[COG0657] Esterase/lipase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCTCGT ACGAACCCGC CTGGCTGGAA GGCATGTACA ACAATCTTGC GCGCGTGAAG 
GACCACCCGG CGTACTTCGC CCGCTGGGGG CGCGACTCGC AAGCCGTGCG CGAAACCCTG
GCCGGCCGCA TCGACGTGCC CTATGGCCCG GGCGTGAACG AGACGCTCGA CCTCTTTCCC
GCACCCGTGC CCGGCGCGCC GGTGCTGGTG TTCATTCACG GCGGCTACTG GCGCGGGATG
GACAAGCGGG ACCATTCCTT CATTGCGCCC GCATTCAACG ACCGCGGCGT GTGCGTGGTG
ATGCCCAACT ACGCGCTGTG CCCCGGGACG GCGGAGGAAC CCGTGACCGT GCCGGGCATC
CTCATGCAGA TGGTGCGCGC GCTCGAGTGG ACCTGGCGCC ATGCCGCGAG CTTTGGTGCC
GACCCCTCGC GCATCACCGT GGCCGGGCAC TCGGCCGGCG GCCACATGGC GGCGGCGCTG
CTGGCCTGCG ACTGGAAGGC GGCCGCGCCC GACCTGCCGG CGCAGCTGGT GCGCAATGCG
TTGTCGATCT CGGGCCTGCA CGACCTTCGG CCGCTGCAGC GCACGCCGTT TCTCGAAAAC
GTCCTGAAGC TCGGCGATGC GGATGCGCGG CGCGCCAGCC CCGCGCTCTG GCCGGCCCCC
GCGCGCGGCC AGCTGCATGC GCTGGTGGGG GCCGAGGAGA GCGAAGAGTT CATTCGCCAG
AATGCGTTGA TTCGCCAGGC GTGGGGCCGC AACGCCGTGC CCGTGTGCGA ATCGCTTGCC
GGGCTGAACC ACTTCAGCAT CGTCGACGCG CTGGCGGATC CGGCCCACAG GCTGCATCGC
GACGCGGTGC AGCTGCTGGA GGCCTGA
 
Protein sequence
MASYEPAWLE GMYNNLARVK DHPAYFARWG RDSQAVRETL AGRIDVPYGP GVNETLDLFP 
APVPGAPVLV FIHGGYWRGM DKRDHSFIAP AFNDRGVCVV MPNYALCPGT AEEPVTVPGI
LMQMVRALEW TWRHAASFGA DPSRITVAGH SAGGHMAAAL LACDWKAAAP DLPAQLVRNA
LSISGLHDLR PLQRTPFLEN VLKLGDADAR RASPALWPAP ARGQLHALVG AEESEEFIRQ
NALIRQAWGR NAVPVCESLA GLNHFSIVDA LADPAHRLHR DAVQLLEA