| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1530 |
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| Symbol | |
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| ID | 7973129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1648238 |
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| End bp | 1649143 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644792129 |
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| Product | type II secretion system protein |
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| Protein accession | YP_002943447 |
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| Protein GI | 239814537 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2064] Flp pilus assembly protein TadC |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGTTCC CCATTCTCGT GTTCGTGGCC GTTTCGCTCG CCGTCGGCGG ATTCGCGGTC
TGGATGCTGC CCACGCGTAC CGAGCAGCGG CTGCGGGCGG TGGCACCTGC GGGCAAGTCC
GCCTGGATCG AGACCGCCGT CAAGATCGTC GGGCCCTTCG CCCAGCTGTC TTCGCCTACC
GGCGAAGGCG AGACCTCGCC GCTGCGCTTG AAGTTCCTCA ACGCGGGCGT CCGCCACCCG
GACGCGAGCC TTTTCTACTT CGGCCTGAAG ACGCTGCTGC CGCTCGGTTT TGCGGCCCTG
GCATTCGTGA CCGTACGTGC AGCGGGCGCA GACGACGGCG TCACGACCCT GCTGTGGCTG
GCGGTAGTGG CACTGCTCGG CTGCTACCTG CCCAACATCG TGCTGCGCAT GATGATCAAG
AGCCGCCAGC GCGAGATCTT CGAGAACTTT CCCGATGCGG CCGACCTGAT GCTGGTCTGC
GTCGAGGCGG GCCTTGGGCT CGATGCCGCG CTGGTCAAGG TCACCGAGGA GATCCGCGTC
AAGAGCGAAG CCCTGGCGCA GGAGCTGCAC TGGACCAACC TCGAGATGCG TGCGGGCAGC
ACGCGCGAGA AGTCGCTGCG CAACCTTGCG CTGCGCACCG GCGTGGAGGA AATCGGAACC
TTTGCGACCA TGCTGACCCA GGCCGATCGG TTCGGCACCA GCATCGGCGA ATCGCTGCGC
GTGTTCTCGG AAGACCTGCG CCACAAGCGC CAGGTTCGCG CGGAAGAGCT GGCCGCCAAG
GTGCCGACCA AGATGCTGCT GCCACTGGTG GTTTGCATCT TTCCATGCAT CTCGGCGGTC
ATCCTCACGC CGGCGGCCAT CCGCATCGTG CGCATCATCG GGCCGATGCT CAGCGGCGGG
CTGTGA
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| Protein sequence | MLFPILVFVA VSLAVGGFAV WMLPTRTEQR LRAVAPAGKS AWIETAVKIV GPFAQLSSPT
GEGETSPLRL KFLNAGVRHP DASLFYFGLK TLLPLGFAAL AFVTVRAAGA DDGVTTLLWL
AVVALLGCYL PNIVLRMMIK SRQREIFENF PDAADLMLVC VEAGLGLDAA LVKVTEEIRV
KSEALAQELH WTNLEMRAGS TREKSLRNLA LRTGVEEIGT FATMLTQADR FGTSIGESLR
VFSEDLRHKR QVRAEELAAK VPTKMLLPLV VCIFPCISAV ILTPAAIRIV RIIGPMLSGG
L
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